hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-09141683/chunk_1/iprscan-20080813-09141683.nocrc
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Query sequence: pg00680
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00314                                                 210.0    2.2e-58   2
SM00228                                                  78.1    1.1e-18   1
SM00240                                                  32.6    5.4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00314    1/2      27   121 ..     1   102 []   111.4  1.1e-28
SM00314    2/2     234   336 ..     1   102 []    98.6  7.3e-25
SM00240    1/1     413   465 ..     1    49 []    32.6  5.4e-05
SM00228    1/1    1004  1081 ..     1    80 []    78.1  1.1e-18

Alignments of top-scoring domains:
SM00314: domain 1 of 2, from 27 to 121: score 111.4, E = 1.1e-28
                   *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd
                      +++v+r y++d  a  ++ ++k++rvs+++T++dVi+ l+ekf+ ++
     pg00680    27    FHGVMRFYFQDKAA--GNFATKCIRVSSTATTQDVIETLAEKFRPDM 71   

                   ..edpeeYvLvevlpsggkErvLlddenPlqlqklwprdaksprqsslrF
                   +  ++++Y+L+ev+  + +Er+L+ de+Pl +q++w +d     + + rF
     pg00680    72 rmLSSPKYSLYEVH--VSGERRLDIDEKPLVVQLNWNKD-----DREGRF 114  

                   vLrkrdd<-*
                   vL++++d   
     pg00680   115 VLKNEND    121  

SM00314: domain 2 of 2, from 234 to 336: score 98.6, E = 7.3e-25
                   *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd
                      + ++lr+y d+l+   p+ +ykt+++s ++ a   + ++lek++l++
     pg00680   234    SGGTLRIYADSLK---PNIPYKTILLSTTDPADFAVAEALEKYGLEK 277  

                   edpeeYvLvevlp.........sggkErvLlddenPlqlqklwprdaksp
                   e+p++Y++  v+++++ ++++++g kE +L+dde+Plq+++ wp+d    
     pg00680   278 ENPKDYCIARVMLppgaqhsdeKGAKEIILDDDECPLQIFREWPSD---- 323  

                   rqsslrFvLrkrdd<-*
                     ++l+F L++r++   
     pg00680   324 -KGILVFQLKRRPP    336  

SM00240: domain 1 of 1, from 413 to 465: score 32.6, E = 5.4e-05
                   *->tvtiGRss...cdivlpspsiSRrHaeiv.dgd...yliDlgenSsN
                      ++ +G ++ ++++i+l++p+i+ +H+++++ ++  ++         +
     pg00680   413    VTEVGTEKlddNSIQLFGPGIQPHHCDLTnMDGvvtVTPRSM---DA 456  

                   GTfVNgrrv<-*
                    T+V g+r+   
     pg00680   457 ETYVEGQRI    465  

SM00228: domain 1 of 1, from 1004 to 1081: score 78.1, E = 1.1e-18
                   *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv
                      +g+G+siv  ++ ++++ gi+v+svv+G++A+ +Gr     L +GD+
     pg00680  1004    NGMGLSIVAakgagqdklGIYVKSVVKGGAADVDGR-----LAAGDQ 1045 

                   IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +l+V+G  s+ gl++e+a++l+ +++      +vtL+v ++g   
     pg00680  1046 LLSVDG-RSLVGLSQERAAELMTRTSS-----VVTLEVAKQG    1081 

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