hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-09203535/chunk_1/iprscan-20080813-09203535.nocrc
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Query sequence: pg00681
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00498.16.fs FHA domain                                      28.1      1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00498.16.fs   1/1       1    47 [.    31    94 .]    28.1    1e-07

Alignments of top-scoring domains:
PF00498.16.fs: domain 1 of 1, from 1 to 47: score 28.1, E = 1e-07
                   *->aeieykdggvglelafrpaqvkefgvylrDlssknlnGatfvNgkrl
                      a+i y+ ++++                ++Dl+s+n  G tfvN+ r+
     pg00681     1    AVINYDQDRDEH--------------WVKDLGSLN--G-TFVNDMRI 30   

                   gngepvrLksGdvirlG<-*
                   +  + v Lk +dvir+G   
     pg00681    31 PDQKYVTLKLNDVIRFG    47   

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