hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-09330331/chunk_1/iprscan-20080813-09330331.nocrc
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Query sequence: pg00724
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF01602.10.fs Adaptin N terminal region                     136.2    2.7e-39   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF01602.10.fs   1/1       1   128 [.    91   226 ..   136.2  2.7e-39

Alignments of top-scoring domains:
PF01602.10.fs: domain 1 of 1, from 1 to 128: score 136.2, E = 2.7e-39
                   *->laiLatntikkDLqspNplirglALrtLssirvpelardlapdikkl
                      l++L++n+ik+DL s+Np ++glAL++++s++++e+a+++a +i+k 
     pg00724     1    LIRLINNAIKNDLASRNPTFMGLALHCIASVGSREMAEAFAGEIPKV 47   

                   lvdespnpyVRKkAalailkLyrkdpelvernglvedlkelLslDsnpgV
                   lv ++++++V+++Aal++l+Lyr +p+lv+++++++++++lL+ D++ gV
     pg00724    48 LVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN-DQHLGV 96   

                   vsaAVaaldeickqnpdllllfrDlklvplLvrfvrllr<-*
                   v+aA+++++ ++ +np+ ++++      +l v+  rl+r   
     pg00724    97 VTAATSLITTLAQKNPEEFKTSV-----SLAVS--RLSR    128  

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