# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Opg00724.fasta.nr -Q pg00724.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 pg00724, 143 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842231 sequences Expectation_n fit: rho(ln(x))= 4.8974+/-0.000178; mu= 6.8005+/- 0.010 mean_var=58.0329+/-11.345, 0's: 48 Z-trim: 56 B-trim: 0 in 0/65 Lambda= 0.168359 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088424|dbj|BAD92659.1| adaptor-related protei ( 143) 904 227.2 5.8e-58 gi|119622822|gb|EAX02417.1| adaptor-related protei ( 277) 810 204.5 7.4e-51 gi|193786023|dbj|BAG50999.1| unnamed protein produ ( 353) 810 204.6 9.1e-51 gi|119622824|gb|EAX02419.1| adaptor-related protei ( 580) 810 204.7 1.4e-50 gi|14042895|dbj|BAB55435.1| unnamed protein produc ( 656) 810 204.7 1.5e-50 gi|119622823|gb|EAX02418.1| adaptor-related protei ( 863) 810 204.8 1.9e-50 gi|55726740|emb|CAH90132.1| hypothetical protein [ ( 940) 810 204.8 2e-50 gi|62898848|dbj|BAD97278.1| adaptor-related protei ( 940) 810 204.8 2e-50 gi|109104920|ref|XP_001116794.1| PREDICTED: adapto ( 953) 810 204.8 2.1e-50 gi|163931088|pdb|2VGL|A Chain A, Ap2 Clathrin Adap ( 621) 805 203.5 3.4e-50 gi|149061675|gb|EDM12098.1| adaptor protein comple ( 694) 805 203.5 3.7e-50 gi|149061673|gb|EDM12096.1| adaptor protein comple ( 735) 805 203.5 3.9e-50 gi|14714884|gb|AAH10597.1| Ap2a2 protein [Mus musc ( 756) 805 203.5 3.9e-50 gi|148686169|gb|EDL18116.1| adaptor protein comple ( 915) 805 203.6 4.6e-50 gi|194218645|ref|XP_001917646.1| PREDICTED: simila ( 923) 805 203.6 4.6e-50 gi|113336|sp|P17427.1|AP2A2_MOUSE AP-2 complex sub ( 938) 805 203.6 4.7e-50 gi|113337|sp|P18484.3|AP2A2_RAT AP-2 complex subun ( 938) 805 203.6 4.7e-50 gi|34784229|gb|AAH58099.1| Adaptor protein complex ( 938) 805 203.6 4.7e-50 gi|26353524|dbj|BAC40392.1| unnamed protein produc ( 938) 805 203.6 4.7e-50 gi|74220100|dbj|BAE31240.1| unnamed protein produc ( 938) 805 203.6 4.7e-50 gi|51859448|gb|AAH81786.1| Adaptor protein complex ( 939) 805 203.6 4.7e-50 gi|73983473|ref|XP_533200.2| PREDICTED: similar to (1007) 805 203.6 5e-50 gi|60098739|emb|CAH65200.1| hypothetical protein [ ( 938) 794 200.9 3e-49 gi|122142416|sp|Q0VCK5.1|AP2A2_BOVIN AP-2 complex ( 938) 788 199.5 8.2e-49 gi|89272762|emb|CAJ83860.1| daptor-related protein ( 631) 762 193.1 4.7e-47 gi|45709802|gb|AAH67918.1| Adaptor-related protein ( 939) 762 193.2 6.6e-47 gi|60550985|gb|AAH91638.1| MGC99219 protein [Xenop ( 939) 754 191.2 2.5e-46 gi|47210142|emb|CAF95181.1| unnamed protein produc ( 995) 739 187.6 3.3e-45 gi|189517144|ref|XP_001922436.1| PREDICTED: simila ( 930) 735 186.6 6.1e-45 gi|189517142|ref|XP_001922441.1| PREDICTED: simila ( 954) 735 186.6 6.3e-45 gi|149572555|ref|XP_001517435.1| PREDICTED: hypoth ( 253) 725 183.8 1.1e-44 gi|114107723|gb|AAI22996.1| Ap2a1 protein [Xenopus ( 956) 724 183.9 4e-44 gi|194378486|dbj|BAG63408.1| unnamed protein produ ( 494) 711 180.6 2.1e-43 gi|12053345|emb|CAB66859.1| hypothetical protein [ ( 955) 714 181.5 2.2e-43 gi|15963477|gb|AAL11040.1|AF289221_2 alpha-adaptin ( 955) 714 181.5 2.2e-43 gi|149056010|gb|EDM07441.1| adaptor protein comple ( 977) 714 181.5 2.2e-43 gi|19913414|ref|NP_055018.2| adaptor-related prote ( 977) 714 181.5 2.2e-43 gi|20178274|sp|O95782.2|AP2A1_HUMAN AP-2 complex s ( 977) 714 181.5 2.2e-43 gi|119572921|gb|EAW52536.1| adaptor-related protei ( 982) 714 181.5 2.2e-43 gi|15559717|gb|AAH14214.1| AP2A1 protein [Homo sap ( 982) 714 181.5 2.2e-43 gi|73947941|ref|XP_541490.2| PREDICTED: similar to ( 922) 713 181.3 2.5e-43 gi|109125572|ref|XP_001115439.1| PREDICTED: simila ( 936) 713 181.3 2.5e-43 gi|116256510|ref|NP_001070732.1| adaptor protein c ( 955) 713 181.3 2.5e-43 gi|109125570|ref|XP_001115452.1| PREDICTED: simila ( 955) 713 181.3 2.5e-43 gi|194215796|ref|XP_001917381.1| PREDICTED: adapto ( 967) 713 181.3 2.6e-43 gi|113334|sp|P17426.1|AP2A1_MOUSE AP-2 complex sub ( 977) 713 181.3 2.6e-43 gi|109125568|ref|XP_001115458.1| PREDICTED: simila ( 977) 713 181.3 2.6e-43 gi|148690825|gb|EDL22772.1| adaptor protein comple (1014) 713 181.3 2.7e-43 gi|22761679|dbj|BAC11653.1| unnamed protein produc ( 467) 686 174.5 1.3e-41 gi|167862688|gb|EDS26071.1| adaptin, alpha/gamma/e ( 933) 631 161.3 2.5e-37 >>gi|62088424|dbj|BAD92659.1| adaptor-related protein co (143 aa) initn: 904 init1: 904 opt: 904 Z-score: 1195.8 bits: 227.2 E(): 5.8e-58 Smith-Waterman score: 904; 100.000% identity (100.000% similar) in 143 aa overlap (1-143:1-143) 10 20 30 40 50 60 pg0072 LIRLINNAIKNDLASRNPTFMGLALHCIASVGSREMAEAFAGEIPKVLVAGDTMDSVKQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LIRLINNAIKNDLASRNPTFMGLALHCIASVGSREMAEAFAGEIPKVLVAGDTMDSVKQS 10 20 30 40 50 60 70 80 90 100 110 120 pg0072 AALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS 70 80 90 100 110 120 130 140 pg0072 LAVSRLSRVSLFVGEQKSGWVLS ::::::::::::::::::::::: gi|620 LAVSRLSRVSLFVGEQKSGWVLS 130 140 >>gi|119622822|gb|EAX02417.1| adaptor-related protein co (277 aa) initn: 810 init1: 810 opt: 810 Z-score: 1068.2 bits: 204.5 E(): 7.4e-51 Smith-Waterman score: 810; 99.225% identity (100.000% similar) in 129 aa overlap (1-129:32-160) 10 20 30 pg0072 LIRLINNAIKNDLASRNPTFMGLALHCIAS :::::::::::::::::::::::::::::: gi|119 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAS 10 20 30 40 50 60 40 50 60 70 80 90 pg0072 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN 70 80 90 100 110 120 100 110 120 130 140 pg0072 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRVSLFVGEQKSGWVLS ::::::::::::::::::::::::::::::::::::::. gi|119 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 130 140 150 160 170 180 gi|119 SVKLLRLLQCYPPPDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLII 190 200 210 220 230 240 >>gi|193786023|dbj|BAG50999.1| unnamed protein product [ (353 aa) initn: 810 init1: 810 opt: 810 Z-score: 1066.6 bits: 204.6 E(): 9.1e-51 Smith-Waterman score: 810; 99.225% identity (100.000% similar) in 129 aa overlap (1-129:108-236) 10 20 30 pg0072 LIRLINNAIKNDLASRNPTFMGLALHCIAS :::::::::::::::::::::::::::::: gi|193 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAS 80 90 100 110 120 130 40 50 60 70 80 90 pg0072 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN 140 150 160 170 180 190 100 110 120 130 140 pg0072 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRVSLFVGEQKSGWVLS ::::::::::::::::::::::::::::::::::::::. gi|193 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 200 210 220 230 240 250 gi|193 SVKLLRLLQCYPPPDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLII 260 270 280 290 300 310 >>gi|119622824|gb|EAX02419.1| adaptor-related protein co (580 aa) initn: 810 init1: 810 opt: 810 Z-score: 1063.4 bits: 204.7 E(): 1.4e-50 Smith-Waterman score: 810; 99.225% identity (100.000% similar) in 129 aa overlap (1-129:32-160) 10 20 30 pg0072 LIRLINNAIKNDLASRNPTFMGLALHCIAS :::::::::::::::::::::::::::::: gi|119 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAS 10 20 30 40 50 60 40 50 60 70 80 90 pg0072 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN 70 80 90 100 110 120 100 110 120 130 140 pg0072 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRVSLFVGEQKSGWVLS ::::::::::::::::::::::::::::::::::::::. gi|119 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 130 140 150 160 170 180 gi|119 SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI 190 200 210 220 230 240 >>gi|14042895|dbj|BAB55435.1| unnamed protein product [H (656 aa) initn: 810 init1: 810 opt: 810 Z-score: 1062.7 bits: 204.7 E(): 1.5e-50 Smith-Waterman score: 810; 99.225% identity (100.000% similar) in 129 aa overlap (1-129:108-236) 10 20 30 pg0072 LIRLINNAIKNDLASRNPTFMGLALHCIAS :::::::::::::::::::::::::::::: gi|140 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAS 80 90 100 110 120 130 40 50 60 70 80 90 pg0072 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|140 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN 140 150 160 170 180 190 100 110 120 130 140 pg0072 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRVSLFVGEQKSGWVLS ::::::::::::::::::::::::::::::::::::::. gi|140 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 200 210 220 230 240 250 gi|140 SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI 260 270 280 290 300 310 >>gi|119622823|gb|EAX02418.1| adaptor-related protein co (863 aa) initn: 810 init1: 810 opt: 810 Z-score: 1060.9 bits: 204.8 E(): 1.9e-50 Smith-Waterman score: 810; 99.225% identity (100.000% similar) in 129 aa overlap (1-129:32-160) 10 20 30 pg0072 LIRLINNAIKNDLASRNPTFMGLALHCIAS :::::::::::::::::::::::::::::: gi|119 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAS 10 20 30 40 50 60 40 50 60 70 80 90 pg0072 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN 70 80 90 100 110 120 100 110 120 130 140 pg0072 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRVSLFVGEQKSGWVLS ::::::::::::::::::::::::::::::::::::::. gi|119 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 130 140 150 160 170 180 gi|119 SVKLLRLLQCYPPPDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLII 190 200 210 220 230 240 >>gi|55726740|emb|CAH90132.1| hypothetical protein [Pong (940 aa) initn: 810 init1: 810 opt: 810 Z-score: 1060.3 bits: 204.8 E(): 2e-50 Smith-Waterman score: 810; 99.225% identity (100.000% similar) in 129 aa overlap (1-129:108-236) 10 20 30 pg0072 LIRLINNAIKNDLASRNPTFMGLALHCIAS :::::::::::::::::::::::::::::: gi|557 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAS 80 90 100 110 120 130 40 50 60 70 80 90 pg0072 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN 140 150 160 170 180 190 100 110 120 130 140 pg0072 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRVSLFVGEQKSGWVLS ::::::::::::::::::::::::::::::::::::::. gi|557 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 200 210 220 230 240 250 gi|557 SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI 260 270 280 290 300 310 >>gi|62898848|dbj|BAD97278.1| adaptor-related protein co (940 aa) initn: 810 init1: 810 opt: 810 Z-score: 1060.3 bits: 204.8 E(): 2e-50 Smith-Waterman score: 810; 99.225% identity (100.000% similar) in 129 aa overlap (1-129:108-236) 10 20 30 pg0072 LIRLINNAIKNDLASRNPTFMGLALHCIAS :::::::::::::::::::::::::::::: gi|628 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAS 80 90 100 110 120 130 40 50 60 70 80 90 pg0072 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN 140 150 160 170 180 190 100 110 120 130 140 pg0072 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRVSLFVGEQKSGWVLS ::::::::::::::::::::::::::::::::::::::. gi|628 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 200 210 220 230 240 250 gi|628 SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI 260 270 280 290 300 310 >>gi|109104920|ref|XP_001116794.1| PREDICTED: adaptor-re (953 aa) initn: 810 init1: 810 opt: 810 Z-score: 1060.3 bits: 204.8 E(): 2.1e-50 Smith-Waterman score: 810; 99.225% identity (100.000% similar) in 129 aa overlap (1-129:83-211) 10 20 30 pg0072 LIRLINNAIKNDLASRNPTFMGLALHCIAS :::::::::::::::::::::::::::::: gi|109 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAS 60 70 80 90 100 110 40 50 60 70 80 90 pg0072 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN 120 130 140 150 160 170 100 110 120 130 140 pg0072 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRVSLFVGEQKSGWVLS ::::::::::::::::::::::::::::::::::::::. gi|109 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 180 190 200 210 220 230 gi|109 SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI 240 250 260 270 280 290 >>gi|163931088|pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor (621 aa) initn: 805 init1: 805 opt: 805 Z-score: 1056.4 bits: 203.5 E(): 3.4e-50 Smith-Waterman score: 805; 97.674% identity (100.000% similar) in 129 aa overlap (1-129:108-236) 10 20 30 pg0072 LIRLINNAIKNDLASRNPTFMGLALHCIAS :::::::::::::::::::::::::::::. gi|163 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAN 80 90 100 110 120 130 40 50 60 70 80 90 pg0072 VGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|163 VGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN 140 150 160 170 180 190 100 110 120 130 140 pg0072 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRVSLFVGEQKSGWVLS ::::::::::::::::::::::::::::::::::::::. gi|163 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 200 210 220 230 240 250 gi|163 SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI 260 270 280 290 300 310 143 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 09:30:01 2008 done: Wed Aug 13 09:33:02 2008 Total Scan time: 563.410 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]