hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-09451256/chunk_1/iprscan-20080813-09451256.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pg00769 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00005.17.ls ABC transporter 342.4 6.9e-100 2 PF00005.17.fs ABC transporter 338.8 8.3e-99 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00005.17.fs 1/2 563 743 .. 1 224 [] 196.0 8e-56 PF00005.17.ls 1/2 563 743 .. 1 224 [] 197.8 2.3e-56 PF00005.17.fs 2/2 1413 1594 .. 1 224 [] 142.8 8.6e-40 PF00005.17.ls 2/2 1413 1594 .. 1 224 [] 144.6 2.5e-40 Alignments of top-scoring domains: PF00005.17.fs: domain 1 of 2, from 563 to 743: score 196.0, E = 8e-56 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G++++l+G+NGaGK+T L +l+Gl + Pt +G+ ++ g+ +d pg00769 563 GQITVLLGHNGAGKTTTLSMLTGLFP-PT--SGRAYISGYEI--SQD 604 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + +++ + +g ++Q+ lf +lTv+e l pg00769 605 MVQIRKS--------LGLCPQHDILF--DNLTVAEHL------------- 631 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg ++++ l+gl++ +++ ++L+ Gl+d+ ++ r + pg00769 632 -YFYAQLKGLsRQKCPEEVKQMLHIIGLEDKWNS-------------RSR 667 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge LSGG++++++i al+ +k+L+LDEPT+g D++sr+++++ll++ ++ pg00769 668 FLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKS- 716 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* +t++l+tH +d++d l dri+++++G pg00769 717 -DRTIVLTTHFMDEADLLGDRIAIMAKG 743 PF00005.17.ls: domain 1 of 2, from 563 to 743: score 197.8, E = 2.3e-56 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G++++l+G+NGaGK+T L +l+Gl + Pt +G+ ++ g+ +d pg00769 563 GQITVLLGHNGAGKTTTLSMLTGLFP-PT--SGRAYISGYEI--SQD 604 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + +++ + +g ++Q+ lf +lTv+e l pg00769 605 MVQIRKS--------LGLCPQHDILF--DNLTVAEHL------------- 631 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg ++++ l+gl++ +++ ++L+ Gl+d+ ++ r + pg00769 632 -YFYAQLKGLsRQKCPEEVKQMLHIIGLEDKWNS-------------RSR 667 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge LSGG++++++i al+ +k+L+LDEPT+g D++sr+++++ll++ ++ pg00769 668 FLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKS- 716 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* +t++l+tH +d++d l dri+++++G pg00769 717 -DRTIVLTTHFMDEADLLGDRIAIMAKG 743 PF00005.17.fs: domain 2 of 2, from 1413 to 1594: score 142.8, E = 8.6e-40 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd Ge +l+G NGaGK+T +k+l+G++s t +G+ + g+ pg00769 1413 GECFGLLGFNGAGKTTTFKMLTGEES-LT--SGDAFVGGH------- 1449 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke +s+++ + r+rigy++Q+ l+ ++T re l+++ pg00769 1450 ---RISSDVGKVRQRIGYCPQFDALL--DHMTGREMLVMY---------- 1484 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg +rl+g +e + a +e L+ + l++ a++ ++ pg00769 1485 ----ARLRGIpERHIGACVENTLRGLLLEPHANK-------------LVR 1517 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge t+SGG k++++ al+ +p +++LDEP +g Dp++r+ l++++ + r e pg00769 1518 TYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARAR-E 1566 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* g+++++++H++++ + l++r++++ +G pg00769 1567 SGKAIIITSHSMEECEALCTRLAIMVQG 1594 PF00005.17.ls: domain 2 of 2, from 1413 to 1594: score 144.6, E = 2.5e-40 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd Ge +l+G NGaGK+T +k+l+G++s t +G+ + g+ pg00769 1413 GECFGLLGFNGAGKTTTFKMLTGEES-LT--SGDAFVGGH------- 1449 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke +s+++ + r+rigy++Q+ l+ ++T re l+++ pg00769 1450 ---RISSDVGKVRQRIGYCPQFDALL--DHMTGREMLVMY---------- 1484 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg +rl+g +e + a +e L+ + l++ a++ ++ pg00769 1485 ----ARLRGIpERHIGACVENTLRGLLLEPHANK-------------LVR 1517 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge t+SGG k++++ al+ +p +++LDEP +g Dp++r+ l++++ + r e pg00769 1518 TYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARAR-E 1566 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* g+++++++H++++ + l++r++++ +G pg00769 1567 SGKAIIITSHSMEECEALCTRLAIMVQG 1594 //