hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-09574662/chunk_1/iprscan-20080813-09574662.nocrc
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Query sequence: pg00883
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08477.3.fs Miro-like protein                               43.8    2.7e-12   1
PF00071.12.fs Ras family                                      37.9    4.8e-11   1
PF08477.3.ls Miro-like protein                               44.5    3.2e-10   1
PF00071.12.ls Ras family                                     -35.7    1.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08477.3.fs   1/1     146   248 ..     1   123 [.    43.8  2.7e-12
PF00071.12.fs   1/1     146   251 ..     1   102 [.    37.9  4.8e-11
PF08477.3.ls   1/1     146   261 ..     1   139 []    44.5  3.2e-10
PF00071.12.ls   1/1     146   278 ..     1   174 []   -35.7  1.2e-06

Alignments of top-scoring domains:
PF08477.3.fs: domain 1 of 1, from 146 to 248: score 43.8, E = 2.7e-12
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      k+ ++Gd+ vGK++l q +  +            +k ++ ++g ++ 
     pg00883   146    KCILAGDPAVGKTALAQIFRSDGAH--------FQKSYTLTTGMDLV 184  

                   vdtlevdgdtklenvrlkefllilwDtggreelkfehepiAymktaDavl
                   v+t+ v+  +++         l ++D +g e+++++++ +   + +++ +
     pg00883   185 VKTVPVPDTGDS-------VELFIFDSAGKELFSEMLDKL--WESPNVLC 225  

                   lvyDlsdpeSfervsslikwlpnlrk<-*
                   lvyD++++eSf+ +    kwl  +r+   
     pg00883   226 LVYDVTNEESFNNC---SKWLEKARS    248  

PF00071.12.fs: domain 1 of 1, from 146 to 251: score 37.9, E = 4.8e-11
                   *->KlVlvGDgGVGKSsLliRFtdn..kFpeeYipTIGvDFytktvevd.
                      K++l GD +VGK++L   F  ++ +F ++Y  T G D  +ktv v +
     pg00883   146    KCILAGDPAVGKTALAQIFRSDgaHFQKSYTLTTGMDLVVKTVPVPd 192  

                   .gktvkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkW
                   +g  v+L I D AG E F+ + +      ++  LVYD+T+++SF+n+ kW
     pg00883   193 tGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCSKW 242  

                   leeilrhad<-*
                   le  + +a+   
     pg00883   243 LEKARSQAP    251  

PF08477.3.ls: domain 1 of 1, from 146 to 261: score 44.5, E = 3.2e-10
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      k+ ++Gd+ vGK++l q +  +            +k ++ ++g ++ 
     pg00883   146    KCILAGDPAVGKTALAQIFRSDGAH--------FQKSYTLTTGMDLV 184  

                   vdtlevdgdtklenvrlkefllilwDtggreelkfehepiAymktaDavl
                   v+t+ v+  +++         l ++D +g e+++++++ +   + +++ +
     pg00883   185 VKTVPVPDTGDS-------VELFIFDSAGKELFSEMLDKL--WESPNVLC 225  

                   lvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnKlD<-*
                   lvyD++++eSf+ +s  + + +++ + g++ +P    g+ +    
     pg00883   226 LVYDVTNEESFNNCSKWLEKARSQAP-GIS-LP----GTGCR    261  

PF00071.12.ls: domain 1 of 1, from 146 to 278: score -35.7, E = 1.2e-06
                   *->KlVlvGDgGVGKSsLliRFtdn..kFpeeYipTIGvDFytktvevd.
                      K++l GD +VGK++L   F  ++ +F ++Y  T G D  +ktv v +
     pg00883   146    KCILAGDPAVGKTALAQIFRSDgaHFQKSYTLTTGMDLVVKTVPVPd 192  

                   .gktvkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkW
                   +g  v+L I D AG E F+ + +      ++  LVYD+T+++SF+n+ kW
     pg00883   193 tGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCSKW 242  

                   leeilrhadkdenvpivLVGNKcDLeddedlelekqkRqVsteeGealAk
                   le  + +a+      i L G+ c  ++           + +++       
     pg00883   243 LEKARSQAP--G---ISLPGTGC--RH----------PCFPAAS-----L 270  

                   elgAlpFmETSAKtneNVeeaFeelareilk<-*
                   ++g                        ++     
     pg00883   271 SFG-----------------------SRAQG    278  

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