# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Opg00883.fasta.nr -Q pg00883.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 pg00883, 294 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6828179 sequences Expectation_n fit: rho(ln(x))= 5.8996+/-0.000203; mu= 7.9414+/- 0.011 mean_var=126.1647+/-24.103, 0's: 44 Z-trim: 97 B-trim: 125 in 1/65 Lambda= 0.114184 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088428|dbj|BAD92661.1| Putative GTP-binding p ( 294) 2035 345.6 5.3e-93 gi|119580518|gb|EAW60114.1| RAB, member of RAS onc ( 370) 1721 294.0 2.3e-77 gi|20178058|sp|Q9BW83|RAYL_HUMAN Putative GTP-bind ( 186) 781 138.8 6e-31 gi|30583857|gb|AAP36177.1| Homo sapiens RAB, membe ( 187) 781 138.8 6e-31 gi|3093311|emb|CAA18787.1| hypothetical protein [H ( 185) 761 135.5 5.9e-30 gi|169158881|emb|CAQ07604.1| RAB, member of RAS on ( 116) 753 134.0 1.1e-29 gi|73969807|ref|XP_531746.2| PREDICTED: similar to ( 340) 754 134.7 2e-29 gi|119580519|gb|EAW60115.1| RAB, member of RAS onc ( 187) 744 132.7 4.1e-29 gi|122143507|sp|Q0VCN3|RAYL_BOVIN Putative GTP-bin ( 186) 737 131.6 9.1e-29 gi|119906644|ref|XP_589411.3| PREDICTED: similar t ( 186) 726 129.8 3.2e-28 gi|184191117|gb|ACC76771.1| RAS oncogene family-li ( 186) 725 129.6 3.6e-28 gi|114686234|ref|XP_515106.2| PREDICTED: similar t ( 199) 719 128.7 7.4e-28 gi|169158880|emb|CAQ07603.1| RAB, member of RAS on ( 182) 707 126.6 2.8e-27 gi|149066017|gb|EDM15890.1| RAB, member of RAS onc ( 186) 699 125.3 7e-27 gi|20178059|sp|Q9D0P8|RAYL_MOUSE Putative GTP-bind ( 186) 688 123.5 2.5e-26 gi|118082870|ref|XP_001234599.1| PREDICTED: simila ( 186) 646 116.6 3e-24 gi|126339834|ref|XP_001376120.1| PREDICTED: hypoth ( 294) 607 110.4 3.5e-22 gi|149547384|ref|XP_001511243.1| PREDICTED: hypoth ( 186) 600 109.0 5.7e-22 gi|114107782|gb|AAI23275.1| Rabl4 protein [Xenopus ( 186) 522 96.2 4.2e-18 gi|169641912|gb|AAI60586.1| Unknown (protein for M ( 186) 515 95.0 9.3e-18 gi|56269729|gb|AAH86752.1| Zgc:101893 [Danio rerio ( 186) 511 94.4 1.5e-17 gi|72016101|ref|XP_786289.1| PREDICTED: similar to ( 187) 459 85.8 5.6e-15 gi|156216043|gb|EDO36989.1| predicted protein [Nem ( 187) 456 85.3 7.9e-15 gi|190580586|gb|EDV20668.1| expressed hypothetical ( 185) 423 79.9 3.4e-13 gi|118082874|ref|XP_001234618.1| PREDICTED: simila ( 199) 346 67.2 2.3e-09 gi|169158879|emb|CAQ07602.1| RAB, member of RAS on ( 51) 337 65.1 2.6e-09 gi|158283733|gb|EDP09483.1| small rab-related GTPa ( 204) 316 62.3 7.3e-08 gi|62360653|gb|AAX81064.1| small GTP-binding prote ( 183) 295 58.8 7.5e-07 gi|134063681|emb|CAM39866.1| GTP-binding protein-l ( 186) 289 57.8 1.5e-06 gi|70799544|gb|AAZ09460.1| GTP-binding protein-lik ( 186) 286 57.3 2.1e-06 gi|134070878|emb|CAM69554.1| GTP-binding protein-l ( 186) 286 57.3 2.1e-06 gi|119580520|gb|EAW60116.1| RAB, member of RAS onc ( 141) 284 56.8 2.2e-06 gi|146143835|gb|EAS04240.2| small GTP-binding prot ( 171) 281 56.4 3.5e-06 gi|70871867|gb|EAN85941.1| small GTP-binding prote ( 183) 277 55.8 5.8e-06 gi|38224599|gb|AAR14145.1| putative GTP-binding pr ( 183) 276 55.6 6.5e-06 gi|163778297|gb|EDQ91912.1| predicted protein [Mon ( 175) 274 55.3 8e-06 gi|70868976|gb|EAN83680.1| small GTP-binding prote ( 183) 271 54.8 1.2e-05 gi|124412393|emb|CAK77563.1| unnamed protein produ ( 174) 253 51.8 8.7e-05 gi|124406472|emb|CAK71891.1| unnamed protein produ ( 174) 253 51.8 8.7e-05 gi|108860918|sp|Q29RR0|RAB26_BOVIN Ras-related pro ( 256) 253 52.0 0.00011 gi|118097925|ref|XP_414855.2| PREDICTED: similar t ( 253) 251 51.7 0.00014 gi|126335536|ref|XP_001367034.1| PREDICTED: simila ( 261) 251 51.7 0.00014 gi|76363526|sp|P51156|RAB26_RAT Ras-related protei ( 257) 250 51.5 0.00016 gi|73964188|ref|XP_854125.1| PREDICTED: similar to ( 357) 250 51.7 0.0002 gi|83771518|dbj|BAE61650.1| unnamed protein produc ( 248) 247 51.0 0.00022 gi|76363309|sp|Q504M8|RAB26_MOUSE Ras-related prot ( 260) 246 50.9 0.00025 gi|148690392|gb|EDL22339.1| mCG12848, isoform CRA_ ( 226) 243 50.3 0.00033 gi|62089120|dbj|BAD93004.1| mel transforming oncog ( 152) 236 49.0 0.00056 gi|126307239|ref|XP_001379032.1| PREDICTED: simila ( 532) 243 50.7 0.00058 gi|193901281|gb|EDW00148.1| GH12019 [Drosophila gr ( 202) 237 49.3 0.0006 >>gi|62088428|dbj|BAD92661.1| Putative GTP-binding prote (294 aa) initn: 2035 init1: 2035 opt: 2035 Z-score: 1824.8 bits: 345.6 E(): 5.3e-93 Smith-Waterman score: 2035; 100.000% identity (100.000% similar) in 294 aa overlap (1-294:1-294) 10 20 30 40 50 60 pg0088 AGQVGYGCLESASGPVLVIGGEPDRPSLNPLGRAVLRGWAGSTGRVRSLAPFQTAVSGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AGQVGYGCLESASGPVLVIGGEPDRPSLNPLGRAVLRGWAGSTGRVRSLAPFQTAVSGLE 10 20 30 40 50 60 70 80 90 100 110 120 pg0088 PGPPGALPCPPAPSARYPPPAQKGRARSSPVPSRPLTLEISPPLPTFPSQASPGPEAHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PGPPGALPCPPAPSARYPPPAQKGRARSSPVPSRPLTLEISPPLPTFPSQASPGPEAHPL 70 80 90 100 110 120 130 140 150 160 170 180 pg0088 ASLAAALVLWVRLAGVLVTMVKLAAKCILAGDPAVGKTALAQIFRSDGAHFQKSYTLTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ASLAAALVLWVRLAGVLVTMVKLAAKCILAGDPAVGKTALAQIFRSDGAHFQKSYTLTTG 130 140 150 160 170 180 190 200 210 220 230 240 pg0088 MDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 MDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCS 190 200 210 220 230 240 250 260 270 280 290 pg0088 KWLEKARSQAPGISLPGTGCRHPCFPAASLSFGSRAQGHCRGSCGWRRGPGLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KWLEKARSQAPGISLPGTGCRHPCFPAASLSFGSRAQGHCRGSCGWRRGPGLGL 250 260 270 280 290 >>gi|119580518|gb|EAW60114.1| RAB, member of RAS oncogen (370 aa) initn: 1719 init1: 1027 opt: 1721 Z-score: 1544.1 bits: 294.0 E(): 2.3e-77 Smith-Waterman score: 1721; 99.611% identity (99.611% similar) in 257 aa overlap (1-257:47-302) 10 20 30 pg0088 AGQVGYGCLESASGPVLVIGGEPDRPSLNP :::::::::::::::::::::::::::::: gi|119 SSLLPLDFCETLRVGAFGGNQSRVSEEEEEAGQVGYGCLESASGPVLVIGGEPDRPSLNP 20 30 40 50 60 70 40 50 60 70 80 90 pg0088 LGRAVLRGWAGSTGRVRSLAPFQTAVSGLEPGPPGALPCPPAPSARYPPPAQKGRARSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LGRAVLRGWAGSTGRVRSLAPFQTAVSGLEPGPPGALPCPPAPSARYPPPAQKGRARSSP 80 90 100 110 120 130 100 110 120 130 140 150 pg0088 VPSRPLTLEISPPLPTFPSQASPGPEAHPLASLAAALVLWVRLAGVLVTMVKLAAKCILA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VPSRPLTLEISPPLPTFPSQASPGPEAHPLASLAAALVLWVRLAGVLVTMVKLAAKCILA 140 150 160 170 180 190 160 170 180 190 200 210 pg0088 GDPAVGKTALAQIFRSDGAHFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 -DPAVGKTALAQIFRSDGAHFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELF 200 210 220 230 240 250 220 230 240 250 260 270 pg0088 SEMLDKLWESPNVLCLVYDVTNEESFNNCSKWLEKARSQAPGISLPGTGCRHPCFPAASL ::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SEMLDKLWESPNVLCLVYDVTNEESFNNCSKWLEKARSQAPGISLPGVLVGNKTDLAGRR 260 270 280 290 300 310 280 290 pg0088 SFGSRAQGHCRGSCGWRRGPGLGL gi|119 AVDSAEARAWALGQGLECFETSVKEMENFEAPFHCLAKQFHQLYREKVEVFRALA 320 330 340 350 360 370 >>gi|20178058|sp|Q9BW83|RAYL_HUMAN Putative GTP-binding (186 aa) initn: 781 init1: 781 opt: 781 Z-score: 710.8 bits: 138.8 E(): 6e-31 Smith-Waterman score: 781; 100.000% identity (100.000% similar) in 118 aa overlap (140-257:1-118) 110 120 130 140 150 160 pg0088 QASPGPEAHPLASLAAALVLWVRLAGVLVTMVKLAAKCILAGDPAVGKTALAQIFRSDGA :::::::::::::::::::::::::::::: gi|201 MVKLAAKCILAGDPAVGKTALAQIFRSDGA 10 20 30 170 180 190 200 210 220 pg0088 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD 40 50 60 70 80 90 230 240 250 260 270 280 pg0088 VTNEESFNNCSKWLEKARSQAPGISLPGTGCRHPCFPAASLSFGSRAQGHCRGSCGWRRG :::::::::::::::::::::::::::: gi|201 VTNEESFNNCSKWLEKARSQAPGISLPGVLVGNKTDLAGRRAVDSAEARAWALGQGLECF 100 110 120 130 140 150 >>gi|30583857|gb|AAP36177.1| Homo sapiens RAB, member of (187 aa) initn: 781 init1: 781 opt: 781 Z-score: 710.8 bits: 138.8 E(): 6e-31 Smith-Waterman score: 781; 100.000% identity (100.000% similar) in 118 aa overlap (140-257:1-118) 110 120 130 140 150 160 pg0088 QASPGPEAHPLASLAAALVLWVRLAGVLVTMVKLAAKCILAGDPAVGKTALAQIFRSDGA :::::::::::::::::::::::::::::: gi|305 MVKLAAKCILAGDPAVGKTALAQIFRSDGA 10 20 30 170 180 190 200 210 220 pg0088 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD 40 50 60 70 80 90 230 240 250 260 270 280 pg0088 VTNEESFNNCSKWLEKARSQAPGISLPGTGCRHPCFPAASLSFGSRAQGHCRGSCGWRRG :::::::::::::::::::::::::::: gi|305 VTNEESFNNCSKWLEKARSQAPGISLPGVLVGNKTDLAGRRAVDSAEARAWALGQGLECF 100 110 120 130 140 150 >>gi|3093311|emb|CAA18787.1| hypothetical protein [Homo (185 aa) initn: 759 init1: 706 opt: 761 Z-score: 693.0 bits: 135.5 E(): 5.9e-30 Smith-Waterman score: 761; 99.153% identity (99.153% similar) in 118 aa overlap (140-257:1-117) 110 120 130 140 150 160 pg0088 QASPGPEAHPLASLAAALVLWVRLAGVLVTMVKLAAKCILAGDPAVGKTALAQIFRSDGA ::::::::::: :::::::::::::::::: gi|309 MVKLAAKCILA-DPAVGKTALAQIFRSDGA 10 20 170 180 190 200 210 220 pg0088 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|309 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD 30 40 50 60 70 80 230 240 250 260 270 280 pg0088 VTNEESFNNCSKWLEKARSQAPGISLPGTGCRHPCFPAASLSFGSRAQGHCRGSCGWRRG :::::::::::::::::::::::::::: gi|309 VTNEESFNNCSKWLEKARSQAPGISLPGVLVGNKTDLAGRRAVDSAEARAWALGQGLECF 90 100 110 120 130 140 >>gi|169158881|emb|CAQ07604.1| RAB, member of RAS oncoge (116 aa) initn: 751 init1: 698 opt: 753 Z-score: 688.4 bits: 134.0 E(): 1.1e-29 Smith-Waterman score: 753; 99.145% identity (99.145% similar) in 117 aa overlap (140-256:1-116) 110 120 130 140 150 160 pg0088 QASPGPEAHPLASLAAALVLWVRLAGVLVTMVKLAAKCILAGDPAVGKTALAQIFRSDGA ::::::::::: :::::::::::::::::: gi|169 MVKLAAKCILA-DPAVGKTALAQIFRSDGA 10 20 170 180 190 200 210 220 pg0088 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD 30 40 50 60 70 80 230 240 250 260 270 280 pg0088 VTNEESFNNCSKWLEKARSQAPGISLPGTGCRHPCFPAASLSFGSRAQGHCRGSCGWRRG ::::::::::::::::::::::::::: gi|169 VTNEESFNNCSKWLEKARSQAPGISLP 90 100 110 >>gi|73969807|ref|XP_531746.2| PREDICTED: similar to Put (340 aa) initn: 786 init1: 746 opt: 754 Z-score: 683.6 bits: 134.7 E(): 2e-29 Smith-Waterman score: 754; 53.846% identity (68.846% similar) in 260 aa overlap (41-292:53-301) 20 30 40 50 60 pg0088 SASGPVLVIGGEPDRPSLNPLGRAVLRGWAGSTGR--VRSLAPFQTAVSGLEPGPPGALP :..:. . . : ... :::: : gi|739 TNSKGHYHEKAVHQQTWASHPRGARRSDDGGASGHDVITEAVTSQMCAGAREPGPRDAPR 30 40 50 60 70 80 70 80 90 100 110 120 pg0088 CPPAPSARYPPPAQKGRARS-SPV--PSR---PLTLEISPPLPTFPSQASPGPEAHPLAS : :. ...: . . .:. :.: :: . : ::: ... .. gi|739 SPTCSRLRF---GSRGLVTAQAPLQTPARRTGPLEIGASSS-PTFRRRGGREVVMIDISC 90 100 110 120 130 130 140 150 160 170 180 pg0088 LAAALVLWVRLAGVLVTMVKLAAKCILAGDPAVGKTALAQIFRSDGAHFQKSYTLTTGMD . . .: :::::::::::::::: ::::::::::::::::::::.::::::.: gi|739 DHSPSGMSLRRKW-LVTMVKLAAKCILAGDSAVGKTALAQIFRSDGAHFQKNYTLTTGVD 140 150 160 170 180 190 190 200 210 220 230 240 pg0088 LVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCSKW :::::::::::::::::::::::::::::::::::::::::::::::::::.:: ::.:: gi|739 LVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEQSFANCGKW 200 210 220 230 240 250 250 260 270 280 290 pg0088 LEKARSQAPGISLPGTGCRHPCFPAASLSFGSRAQGHCRGSCGWRRGPGLGL ::::::: :: ::::. . . . ...:: . .: : :: gi|739 LEKARSQMPGASLPGV------LVGNKTDLASRRAVDSAQARSWALGQGLECFETSVKEM 260 270 280 290 300 310 gi|739 ENYEAPFHCLAKQFHHLYREKVEVFQALV 320 330 340 >>gi|119580519|gb|EAW60115.1| RAB, member of RAS oncogen (187 aa) initn: 744 init1: 498 opt: 744 Z-score: 677.8 bits: 132.7 E(): 4.1e-29 Smith-Waterman score: 744; 97.479% identity (97.479% similar) in 119 aa overlap (140-257:1-119) 110 120 130 140 150 160 pg0088 QASPGPEAHPLASLAAALVLWVRLAGVLVTMVKLAAKCILAGDPAVGKTALAQIFRSDGA :::::::::::::::::::::::::::::: gi|119 MVKLAAKCILAGDPAVGKTALAQIFRSDGA 10 20 30 170 180 190 200 210 220 pg0088 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWES-PNVLCLVY :::::::::::::::::::::::::::::::::::::::::::::::: : :::::::: gi|119 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLASSTPNVLCLVY 40 50 60 70 80 90 230 240 250 260 270 280 pg0088 DVTNEESFNNCSKWLEKARSQAPGISLPGTGCRHPCFPAASLSFGSRAQGHCRGSCGWRR ::::::::::::::::::::::::::::: gi|119 DVTNEESFNNCSKWLEKARSQAPGISLPGVLVGNKTDLAGRRAVDSAEARAWALGQGLEC 100 110 120 130 140 150 >>gi|122143507|sp|Q0VCN3|RAYL_BOVIN Putative GTP-binding (186 aa) initn: 737 init1: 737 opt: 737 Z-score: 671.6 bits: 131.6 E(): 9.1e-29 Smith-Waterman score: 737; 92.373% identity (98.305% similar) in 118 aa overlap (140-257:1-118) 110 120 130 140 150 160 pg0088 QASPGPEAHPLASLAAALVLWVRLAGVLVTMVKLAAKCILAGDPAVGKTALAQIFRSDGA ::::::::::::::.::::::::.:::::: gi|122 MVKLAAKCILAGDPTVGKTALAQLFRSDGA 10 20 30 170 180 190 200 210 220 pg0088 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD ::::.::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|122 HFQKNYTLTTGVDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD 40 50 60 70 80 90 230 240 250 260 270 280 pg0088 VTNEESFNNCSKWLEKARSQAPGISLPGTGCRHPCFPAASLSFGSRAQGHCRGSCGWRRG ::::.::.:::::::::::: :: .::: gi|122 VTNEQSFTNCSKWLEKARSQIPGTTLPGVLVGNKTDLAGRRVVDVAQAQAWALGQGLECF 100 110 120 130 140 150 >>gi|119906644|ref|XP_589411.3| PREDICTED: similar to RA (186 aa) initn: 726 init1: 726 opt: 726 Z-score: 661.8 bits: 129.8 E(): 3.2e-28 Smith-Waterman score: 726; 91.525% identity (97.458% similar) in 118 aa overlap (140-257:1-118) 110 120 130 140 150 160 pg0088 QASPGPEAHPLASLAAALVLWVRLAGVLVTMVKLAAKCILAGDPAVGKTALAQIFRSDGA ::::::::::::::.::::::::.:::::: gi|119 MVKLAAKCILAGDPTVGKTALAQLFRSDGA 10 20 30 170 180 190 200 210 220 pg0088 HFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD ::::.::::::.::::::: :::::::::::::::::::::::::::::::::::::::: gi|119 HFQKNYTLTTGVDLVVKTVAVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYD 40 50 60 70 80 90 230 240 250 260 270 280 pg0088 VTNEESFNNCSKWLEKARSQAPGISLPGTGCRHPCFPAASLSFGSRAQGHCRGSCGWRRG ::::.::.:::::::::::: :: .::: gi|119 VTNEQSFTNCSKWLEKARSQIPGTTLPGVLVGNKTDLAGRRVVDVAQAQAWALGQGLECF 100 110 120 130 140 150 294 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 09:55:06 2008 done: Wed Aug 13 09:57:45 2008 Total Scan time: 746.060 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]