hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-10272374/chunk_1/iprscan-20080813-10272374.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pg01051 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08454.1.ls RyR and IP3R Homology associated 851.8 3.1e-253 1 PF08454.1.fs RyR and IP3R Homology associated 850.0 1.1e-252 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08454.1.fs 1/1 449 938 .. 1 725 [] 850.0 1.1e-252 PF08454.1.ls 1/1 449 938 .. 1 725 [] 851.8 3.1e-253 Alignments of top-scoring domains: PF08454.1.fs: domain 1 of 1, from 449 to 938: score 850.0, E = 1.1e-252 *->LLaACteGKNvyTEIKCnsLLPlddivrvvthqdcipevKeaYinFL L++A ++ ++LP++++++++t+qd+i+++K++Y pg01051 449 LIVATLK-----------KMLPIGLNMCAPTDQDLITLAKTRYA--- 481 nHCyiDTEvEmKEiyksnhiLpdKldp.dsmrWqLFEKnflvDigrvlna ++DT++E++E++ +n++L++K++ ++s rWq+ ++++ + pg01051 482 ---LKDTDEEVREFLHNNLHLQGKVEGsPSLRWQM---ALYRGVPGR--- 522 tkdekhadktlEkyvtnevanvlthffnrkhSpFselsdqstplqtrqpv ++d +++k++ +++ ev++vl+ + + +++p +++++v pg01051 523 EEDADDPEKIVRRVQ--EVSAVLYYLDQ-----------TEHPYKSKKAV 559 fvkLLqsafrlsqckwlskqrKraWYRVeaCiRtltlygvARhRaInlPv ++kLL skqr+ra V+aC+R+++ly+++ hRa+n+ pg01051 560 WHKLL------------SKQRRRA---VVACFRMTPLYNLPTHRACNM-- 592 dLdsqvnslfsktaskaflqryaskWletekghrrrdsnsaisrdgrnii fl+ y++ W++te+ + +++ + pg01051 593 -----------------FLESYKAAWILTED------------HSFEDRM 613 EglqDlvsslEdqlkPLvqAElSVLVDvLyrPELLfpegsEarekcesgd ++Dl ++ + e++E++ +++++d pg01051 614 --IDDLSKAG-------------------------EQEEEEEEVEEKKPD 636 flskLIkhtkklleeeeelagkLciFekvLYqtLaemmaksckhyeeeGd +l++L++h+++++++e++ kL+ e++LY+++a++maksc h+ee G+ pg01051 637 PLHQLVLHFSRTALTEKS---KLD--EDYLYMAYADIMAKSC-HLEEGGE 680 alrqlLLqRYfgeeselsfpedelpsgigplvepgkekksaggpsaeeke + +ee e+sf eek+ pg01051 681 NGEA-------EEEVEVSF---------------------------EEKQ 696 rekqkLlevQcrLdkeGAaeLVldlisaskgepgeifvealeLGIALLeG +ekq+Ll++Q+rL+ +GAae+Vl++isa+kge+g++++++l+LGI +L+G pg01051 697 MEKQRLLYQQARLHTRGAAEMVLQMISACKGETGAMVSSTLKLGISILNG 746 GNteiQksmlnyLkedkkderFFkvladrMksAQqEiKsTVTVntlDwLg GN e+Q++ml+yLk+ kk+++FF++++ +M+++ ++lD L+ pg01051 747 GNAEVQQKMLDYLKD-KKEVGFFQSIQALMQTC----------SVLD-LN 784 afereekevvsetgkrrrnvsnaheaegkSlglvneegtkeeLyeaalat afer++k aeg lg+vne+gt pg01051 785 AFERQNK------------------AEG--LGMVNEDGT----------- 803 skayinsrrlasgdldhsilvlapleavdiLAEKLEKrederkegeklsn gek+++ pg01051 804 --------------------------------------------GEKVMA 809 dvefmqpllRFLQLLCENHNldLQNyLRtQagNkTNvNLVseTLdFLLRL d+ef+q+l+RFLQLLCE+HN+d+QNyLRtQ+gN+T++N++++T+d+LLRL pg01051 810 DDEFTQDLFRFLQLLCEGHNNDFQNYLRTQTGNTTTINIIICTVDYLLRL 859 QDcICGFYWhYSTtGgLgllGlyinekNvsLinQtLeTLTEYCQGPCheN Q++I++FYW+YS++++++++G+++++k++s+++Q++++LTEY+QGPC++N pg01051 860 QESISDFYWYYSGKDVIEEQGKRNFSKAMSVAKQVFNSLTEYIQGPCTGN 909 QnciAtHRLWDesNGldiitAliLndinp<-* Q+++A++RLWD+++G+++++A++++++ + pg01051 910 QQSLAHSRLWDAVVGFLHVFAHMMMKLAQ 938 PF08454.1.ls: domain 1 of 1, from 449 to 938: score 851.8, E = 3.1e-253 *->LLaACteGKNvyTEIKCnsLLPlddivrvvthqdcipevKeaYinFL L++A ++ ++LP++++++++t+qd+i+++K++Y pg01051 449 LIVATLK-----------KMLPIGLNMCAPTDQDLITLAKTRYA--- 481 nHCyiDTEvEmKEiyksnhiLpdKldp.dsmrWqLFEKnflvDigrvlna ++DT++E++E++ +n++L++K++ ++s rWq+ ++++ + pg01051 482 ---LKDTDEEVREFLHNNLHLQGKVEGsPSLRWQM---ALYRGVPGR--- 522 tkdekhadktlEkyvtnevanvlthffnrkhSpFselsdqstplqtrqpv ++d +++k++ +++ ev++vl+ + + +++p +++++v pg01051 523 EEDADDPEKIVRRVQ--EVSAVLYYLDQ-----------TEHPYKSKKAV 559 fvkLLqsafrlsqckwlskqrKraWYRVeaCiRtltlygvARhRaInlPv ++kLL skqr+ra V+aC+R+++ly+++ hRa+n+ pg01051 560 WHKLL------------SKQRRRA---VVACFRMTPLYNLPTHRACNM-- 592 dLdsqvnslfsktaskaflqryaskWletekghrrrdsnsaisrdgrnii fl+ y++ W++te+ + +++ + pg01051 593 -----------------FLESYKAAWILTED------------HSFEDRM 613 EglqDlvsslEdqlkPLvqAElSVLVDvLyrPELLfpegsEarekcesgd ++Dl ++ + e++E++ +++++d pg01051 614 --IDDLSKAG-------------------------EQEEEEEEVEEKKPD 636 flskLIkhtkklleeeeelagkLciFekvLYqtLaemmaksckhyeeeGd +l++L++h+++++++e++ kL+ e++LY+++a++maksc h+ee G+ pg01051 637 PLHQLVLHFSRTALTEKS---KLD--EDYLYMAYADIMAKSC-HLEEGGE 680 alrqlLLqRYfgeeselsfpedelpsgigplvepgkekksaggpsaeeke + +ee e+sf eek+ pg01051 681 NGEA-------EEEVEVSF---------------------------EEKQ 696 rekqkLlevQcrLdkeGAaeLVldlisaskgepgeifvealeLGIALLeG +ekq+Ll++Q+rL+ +GAae+Vl++isa+kge+g++++++l+LGI +L+G pg01051 697 MEKQRLLYQQARLHTRGAAEMVLQMISACKGETGAMVSSTLKLGISILNG 746 GNteiQksmlnyLkedkkderFFkvladrMksAQqEiKsTVTVntlDwLg GN e+Q++ml+yLk+ kk+++FF++++ +M+++ ++lD L+ pg01051 747 GNAEVQQKMLDYLKD-KKEVGFFQSIQALMQTC----------SVLD-LN 784 afereekevvsetgkrrrnvsnaheaegkSlglvneegtkeeLyeaalat afer++k aeg lg+vne+gt pg01051 785 AFERQNK------------------AEG--LGMVNEDGT----------- 803 skayinsrrlasgdldhsilvlapleavdiLAEKLEKrederkegeklsn gek+++ pg01051 804 --------------------------------------------GEKVMA 809 dvefmqpllRFLQLLCENHNldLQNyLRtQagNkTNvNLVseTLdFLLRL d+ef+q+l+RFLQLLCE+HN+d+QNyLRtQ+gN+T++N++++T+d+LLRL pg01051 810 DDEFTQDLFRFLQLLCEGHNNDFQNYLRTQTGNTTTINIIICTVDYLLRL 859 QDcICGFYWhYSTtGgLgllGlyinekNvsLinQtLeTLTEYCQGPCheN Q++I++FYW+YS++++++++G+++++k++s+++Q++++LTEY+QGPC++N pg01051 860 QESISDFYWYYSGKDVIEEQGKRNFSKAMSVAKQVFNSLTEYIQGPCTGN 909 QnciAtHRLWDesNGldiitAliLndinp<-* Q+++A++RLWD+++G+++++A++++++ + pg01051 910 QQSLAHSRLWDAVVGFLHVFAHMMMKLAQ 938 //