hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-18575290/chunk_1/iprscan-20090630-18575290.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pg01166s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02383.9.ls SacI homology domain 494.8 9.1e-146 1 PF02383.9.fs SacI homology domain 493.1 3.1e-145 1 PF08952.1.fs Domain of unknown function (DUF1866) 303.2 3.1e-89 1 PF08952.1.ls Domain of unknown function (DUF1866) 305.1 1.2e-88 1 PF03372.13.ls Endonuclease/Exonuclease/phosphatase fa 152.2 1.2e-42 1 PF03372.13.fs Endonuclease/Exonuclease/phosphatase fa 150.3 3.2e-42 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02383.9.fs 1/1 89 378 .. 1 366 [] 493.1 3.1e-145 PF02383.9.ls 1/1 89 378 .. 1 366 [] 494.8 9.1e-146 PF03372.13.ls 1/1 561 891 .. 1 198 [] 152.2 1.2e-42 PF03372.13.fs 1/1 561 891 .. 1 198 [] 150.3 3.2e-42 PF08952.1.fs 1/1 892 1037 .. 1 157 [] 303.2 3.1e-89 PF08952.1.ls 1/1 892 1037 .. 1 157 [] 305.1 1.2e-88 Alignments of top-scoring domains: PF02383.9.fs: domain 1 of 1, from 89 to 378: score 493.1, E = 3.1e-145 *->iyGllGlIkLkggdvmLyYLivITgkskVGqigpghaIYkitdvdfi +yG+lG ++Lk+g+ L +L+++Tg+++VG+i+ + +IYkit++df+ pg01166s1 89 AYGCLGELRLKSGGTSLSFLVLVTGCTSVGRIP-DAEIYKITATDFY 134 slnndsvdetdiekkDEarylkihPdgisTdtqeklpkhPcslLkkvLst +l+++ ++e+ +l Lkk+Ls+ pg01166s1 135 PLQEEAKEEE---------RLI--------------------ALKKILSS 155 gtFYFSytyDltntLQrnskvlraplenlessvdradesifdiITdyner g FYFS+++D+++++++ + +++++++s ++ ++ pg01166s1 156 GVFYFSWPNDGSRFDLTVR-----TQKQGDDSSEWGNS------------ 188 FvWNsfLleelinfRshLdneekqqlnverFllpvIhGfikqaslyvngk F+WN+ L+ +l+ ++q+ ++++ll++I+G+++++++y+ +k pg01166s1 189 FFWNQLLHVPLR----------QHQVSCCDWLLKIICGVVTIRTVYASHK 228 tisltLISRRStkRAGTRFlkRGvnddGhVANFVETEQIVydsdskseka +++++L+SR S++R GTRF +RGvnddGhV+NFVETEQ +y++d +s pg01166s1 229 QAKACLVSRVSCERTGTRFHTRGVNDDGHVSNFVETEQMIYMDDGVS--- 275 rysSFVQvRGSIPLFWeQdvegsnLsyKPlivlrsveatapafdrHFddl SFVQ+RGS+PLFWeQ+ g+++++++l+++r++ea+apafdrH+ l pg01166s1 276 ---SFVQIRGSVPLFWEQP--GLQVGSHHLRLHRGLEANAPAFDRHMVLL 320 kqrYGnpivIvNLiktkkekEkplsklyeeflkaseylnsflpeeekiry k++YG ++v+vNL+++ +++E+ l+++++++l+as+++++ +++ pg01166s1 321 KEQYG-QQVVVNLLGS-RGGEEVLNRAFKKLLWASCHAGD-------TPM 361 tsFDFHkeckqmnmswdrl<-* ++FDFH+++k+ + ++l pg01166s1 362 INFDFHQFAKGG--KLEKL 378 PF02383.9.ls: domain 1 of 1, from 89 to 378: score 494.8, E = 9.1e-146 *->iyGllGlIkLkggdvmLyYLivITgkskVGqigpghaIYkitdvdfi +yG+lG ++Lk+g+ L +L+++Tg+++VG+i+ + +IYkit++df+ pg01166s1 89 AYGCLGELRLKSGGTSLSFLVLVTGCTSVGRIP-DAEIYKITATDFY 134 slnndsvdetdiekkDEarylkihPdgisTdtqeklpkhPcslLkkvLst +l+++ ++e+ +l Lkk+Ls+ pg01166s1 135 PLQEEAKEEE---------RLI--------------------ALKKILSS 155 gtFYFSytyDltntLQrnskvlraplenlessvdradesifdiITdyner g FYFS+++D+++++++ + +++++++s ++ ++ pg01166s1 156 GVFYFSWPNDGSRFDLTVR-----TQKQGDDSSEWGNS------------ 188 FvWNsfLleelinfRshLdneekqqlnverFllpvIhGfikqaslyvngk F+WN+ L+ +l+ ++q+ ++++ll++I+G+++++++y+ +k pg01166s1 189 FFWNQLLHVPLR----------QHQVSCCDWLLKIICGVVTIRTVYASHK 228 tisltLISRRStkRAGTRFlkRGvnddGhVANFVETEQIVydsdskseka +++++L+SR S++R GTRF +RGvnddGhV+NFVETEQ +y++d +s pg01166s1 229 QAKACLVSRVSCERTGTRFHTRGVNDDGHVSNFVETEQMIYMDDGVS--- 275 rysSFVQvRGSIPLFWeQdvegsnLsyKPlivlrsveatapafdrHFddl SFVQ+RGS+PLFWeQ+ g+++++++l+++r++ea+apafdrH+ l pg01166s1 276 ---SFVQIRGSVPLFWEQP--GLQVGSHHLRLHRGLEANAPAFDRHMVLL 320 kqrYGnpivIvNLiktkkekEkplsklyeeflkaseylnsflpeeekiry k++YG ++v+vNL+++ +++E+ l+++++++l+as+++++ +++ pg01166s1 321 KEQYG-QQVVVNLLGS-RGGEEVLNRAFKKLLWASCHAGD-------TPM 361 tsFDFHkeckqmnmswdrl<-* ++FDFH+++k+ + ++l pg01166s1 362 INFDFHQFAKGG--KLEKL 378 PF03372.13.ls: domain 1 of 1, from 561 to 891: score 152.2, E = 1.2e-42 *->lkiltwNvnglra.l.s......................llellk.e + +twNvng ++ ++ ++ + +++ ++++ ++ ++ ++ + pg01166s1 561 IAMGTWNVNGGKQfRsNvlrtaeltdwlldspqlsgatdSQDDSSpA 607 dpDvicLQEvklsp.s.ll.l.lg.gyv...................... d+ +++ E++ ++ +++ ++ + + ++ +++++ ++ + pg01166s1 608 DIFAVGFEEMVELSaGnIVnAsTTnKKMwgeqlqkaisrshryilltsaq 657 ..........................ytgfgg.gggkgGvailsklplvs + ++ + + ++ ++ +tg+gg+ g+kg+v+i+++++ pg01166s1 658 lvgvclyifvrpyhvpfirdvaidtvKTGMGGkAGNKGAVGIRFQFH--- 704 vigidlirvilasgt.fvvvntHlpagg.rldeRlaqyaelldflsf... t+f+++++Hl+ag++ + eR+++y+e+ ++l f+ + pg01166s1 705 -------------STsFCFICSHLTAGQsQVKERNEDYKEITQKLCFpmg 741 ....ksdpvilcGDfNarpdeids.llk.igkstl............... ++ ++d+v++cGDfN+r+d ++ +++++++ + ++ + ++++ pg01166s1 742 rnvfSHDYVFWCGDFNYRIDLTYEeVFYfVKRQDWkkllefdqlqlqkss 791 ........elpitfppTywsyrgt.....sekkntgsrlDrilvsg.ll. ++ ++ +e+ i f+pTy+++ g+ ++s+k++t++++Dr+l+ ++ ++ pg01166s1 792 gkifkdfhEGAINFGPTYKYDVGSaaydtSDKCRTPAWTDRVLWWRkKHp 841 rv.il.ille...........................vlgSDHrPVlatl + ++ l + +++ + +++ +++ +++ + ++ ++ +SDHrPVla + pg01166s1 842 FDkTAgELNLldsdldvdtkvrhtwspgalqyygraeLQASDHRPVLAIV 891 <-* pg01166s1 - - PF03372.13.fs: domain 1 of 1, from 561 to 891: score 150.3, E = 3.2e-42 *->lkiltwNvnglra.l.s......................llellk.e + +twNvng ++ ++ ++ + +++ ++++ ++ ++ ++ + pg01166s1 561 IAMGTWNVNGGKQfRsNvlrtaeltdwlldspqlsgatdSQDDSSpA 607 dpDvicLQEvklsp.s.ll.l.lg.gyv...................... d+ +++ E++ ++ +++ ++ + + ++ +++++ ++ + pg01166s1 608 DIFAVGFEEMVELSaGnIVnAsTTnKKMwgeqlqkaisrshryilltsaq 657 ..........................ytgfgg.gggkgGvailsklplvs + ++ + + ++ ++ +tg+gg+ g+kg+v+i+++++ pg01166s1 658 lvgvclyifvrpyhvpfirdvaidtvKTGMGGkAGNKGAVGIRFQFH--- 704 vigidlirvilasgt.fvvvntHlpagg.rldeRlaqyaelldflsf... t+f+++++Hl+ag++ + eR+++y+e+ ++l f+ + pg01166s1 705 -------------STsFCFICSHLTAGQsQVKERNEDYKEITQKLCFpmg 741 ....ksdpvilcGDfNarpdeids.llk.igkstl............... ++ ++d+v++cGDfN+r+d ++ +++++++ + ++ + ++++ pg01166s1 742 rnvfSHDYVFWCGDFNYRIDLTYEeVFYfVKRQDWkkllefdqlqlqkss 791 ........elpitfppTywsyrgt.....sekkntgsrlDrilvsg.ll. ++ ++ +e+ i f+pTy+++ g+ ++s+k++t++++Dr+l+ ++ ++ pg01166s1 792 gkifkdfhEGAINFGPTYKYDVGSaaydtSDKCRTPAWTDRVLWWRkKHp 841 rv.il.ille...........................vlgSDHrPVlatl + ++ l + +++ + +++ +++ +++ + ++ ++ +SDHrPVla + pg01166s1 842 FDkTAgELNLldsdldvdtkvrhtwspgalqyygraeLQASDHRPVLAIV 891 <-* pg01166s1 - - PF08952.1.fs: domain 1 of 1, from 892 to 1037: score 303.2, E = 3.1e-89 *->DVEilEVDpeaRqtVfedVIadqGPPDgTiVVslcSsspAGtDsGDd +VE++EVD++aR++Vf++V+++qGP+D+T+VV+l+S+++ pg01166s1 892 EVEVQEVDVGARERVFQEVSSFQGPLDATVVVNLQSPTL-------- 930 eEkniFdealideLlqkLteyGAeVtLVRFveddMWVTFrdGeSALaaLs eEkn+F+e+l++eL+q+L++yG +++LVR+++++M+VTF+d++SAL++L+ pg01166s1 931 EEKNEFPEDLRTELMQTLGSYG-TIVLVRINQGQMLVTFADSHSALSVLD 979 ldGlkVlGrqLkirLKSpDWikaLeeEisleArdtqlnsvplsanStlLe +dG+kV+Gr++kir+K++DW+k+L+eEi+++ rd+ +++v+++anS+lLe pg01166s1 980 VDGMKVKGRAVKIRPKTKDWLKGLREEIIRK-RDS-MAPVSPTANSCLLE 1027 edadltvaey<-* e++d+t+++y pg01166s1 1028 ENFDFTSLDY 1037 PF08952.1.ls: domain 1 of 1, from 892 to 1037: score 305.1, E = 1.2e-88 *->DVEilEVDpeaRqtVfedVIadqGPPDgTiVVslcSsspAGtDsGDd +VE++EVD++aR++Vf++V+++qGP+D+T+VV+l+S+++ pg01166s1 892 EVEVQEVDVGARERVFQEVSSFQGPLDATVVVNLQSPTL-------- 930 eEkniFdealideLlqkLteyGAeVtLVRFveddMWVTFrdGeSALaaLs eEkn+F+e+l++eL+q+L++yG +++LVR+++++M+VTF+d++SAL++L+ pg01166s1 931 EEKNEFPEDLRTELMQTLGSYG-TIVLVRINQGQMLVTFADSHSALSVLD 979 ldGlkVlGrqLkirLKSpDWikaLeeEisleArdtqlnsvplsanStlLe +dG+kV+Gr++kir+K++DW+k+L+eEi+++ rd+ +++v+++anS+lLe pg01166s1 980 VDGMKVKGRAVKIRPKTKDWLKGLREEIIRK-RDS-MAPVSPTANSCLLE 1027 edadltvaey<-* e++d+t+++y pg01166s1 1028 ENFDFTSLDY 1037 //