hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-18575290/chunk_1/iprscan-20090630-18575290.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: pg01166s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00128                                                 452.5   2.2e-131   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00128    1/1     557   899 ..     1   435 []   452.5 2.2e-131

Alignments of top-scoring domains:
SM00128: domain 1 of 1, from 557 to 899: score 452.5, E = 2.2e-131
                   *->rdikvlvgTwNvngqf.krseadpkvdvtswLfqkid...kedevkq
                      ++i++  gTwNvng++++rs    ++ +t+wL + ++ ++  d +++
   pg01166s1   557    KRIRIAMGTWNVNGGKqFRSNVLRTAELTDWLLDSPQlsgATDSQDD 603  

                   sekpDiyviGlQEvggkkyeesilqvdkivkellsnalkkkillrsfele
                   s ++Di+++G++E+                                +el+
   pg01166s1   604 SSPADIFAVGFEEM--------------------------------VELS 621  

                   agsilesiaakerlWsellesslnevsgksqynvlaserelvgilllvfv
                   ag+i+++ +++ + W e l++++   s+  +y++l+s + lvg++l +fv
   pg01166s1   622 AGNIVNASTTNKKMWGEQLQKAI---SRSHRYILLTSAQ-LVGVCLYIFV 667  

                   kanelkkikdvevktvktGmggltGnKGavaVrfklhdtEgqysfcfVNs
                   ++ + ++i+dv+ +tvktGmgg++GnKGav++rf++h+t    sfcf++s
   pg01166s1   668 RPYHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQFHST----SFCFICS 713  

                   HLaagesNLanveqRnqdYktIrlralsFperketsqrnrflevgkdnIl
                   HL+ag+s   +v++Rn+dYk+I   +l+Fp+++                +
   pg01166s1   714 HLTAGQS---QVKERNEDYKEI-TQKLCFPMGRN--------------VF 745  

                   dhdvvFWfGDLNyRldspsylevlvadaeqqtvlAddlnliaaeldvirk
                   +hd+vFW+GD+NyR+d+++                               
   pg01166s1   746 SHDYVFWCGDFNYRIDLTY------------------------------- 764  

                   vseevrrkIskkekevfdeLlekdQLnrqkeagkvFkgFqEgkIkFpPTY
                     eev  ++++++   +++Lle+dQL +qk  gk+Fk+F+Eg I+F PTY
   pg01166s1   765 --EEVFYFVKRQD---WKKLLEFDQLQLQKSSGKIFKDFHEGAINFGPTY 809  

                   KydredsvgtetYDtsEKkRvPAWcDRILyrs.Krqf.eaapnliqlses
                   Kyd    vg++ YDts K+R+PAW+DR+L+ ++K +f+++a +l++l+ s
   pg01166s1   810 KYD----VGSAAYDTSDKCRTPAWTDRVLWWRkKHPFdKTAGELNLLD-S 854  

                   yfpv.vssiyqeekvvtyyysgmelttSDHkPVfAtFrlkvkkvd<-*
                   + +v+++   ++ ++ + yy ++el +SDH+PV A+++++v +vd   
   pg01166s1   855 DLDVdTKVRHTWSPGALQYYGRAELQASDHRPVLAIVEVEVQEVD    899  

//