hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-11001767/chunk_1/iprscan-20080813-11001767.nocrc
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Query sequence: ph00240
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07500.4.fs Transcription factor S-II (TFIIS), central d    22.4    1.8e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07500.4.fs   1/1      33    52 ..     1    20 [.    22.4  1.8e-05

Alignments of top-scoring domains:
PF07500.4.fs: domain 1 of 1, from 33 to 52: score 22.4, E = 1.8e-05
                   *->tgdsvRdKcrelLddaLvkd<-*
                      t+d+vR+Kcre+L +aL++d   
     ph00240    33    TCDAVRNKCREMLTAALQTD    52   

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