# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oph00240.fasta.nr -Q ph00240.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ph00240, 136 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842419 sequences Expectation_n fit: rho(ln(x))= 5.0645+/-0.000186; mu= 7.1602+/- 0.010 mean_var=76.8129+/-15.460, 0's: 51 Z-trim: 53 B-trim: 5683 in 2/65 Lambda= 0.146338 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|114683107|ref|XP_001152936.1| PREDICTED: simila ( 299) 315 75.0 7.2e-12 gi|29791737|gb|AAH50623.1| TCEA2 protein [Homo sap ( 242) 304 72.6 3.1e-11 gi|55960605|emb|CAI13200.1| transcription elongati ( 246) 304 72.6 3.1e-11 gi|16973073|emb|CAD11900.1| transcription elongati ( 270) 304 72.7 3.3e-11 gi|193786100|dbj|BAG51383.1| unnamed protein produ ( 272) 304 72.7 3.3e-11 gi|16973074|emb|CAD11901.1| transcription elongati ( 272) 304 72.7 3.3e-11 gi|28380177|sp|Q15560|TCEA2_HUMAN Transcription el ( 299) 304 72.7 3.6e-11 gi|119595576|gb|EAW75170.1| transcription elongati ( 324) 304 72.7 3.8e-11 gi|109133624|ref|XP_001114226.1| PREDICTED: simila ( 43) 289 68.8 7.6e-11 gi|109091272|ref|XP_001082986.1| PREDICTED: transc ( 272) 294 70.6 1.4e-10 gi|109091278|ref|XP_001083220.1| PREDICTED: transc ( 296) 294 70.6 1.5e-10 gi|109091270|ref|XP_001083344.1| PREDICTED: transc ( 299) 294 70.6 1.5e-10 gi|109091280|ref|XP_001082344.1| PREDICTED: transc ( 324) 294 70.6 1.6e-10 gi|73992771|ref|XP_537866.2| PREDICTED: similar to ( 451) 294 70.8 2.1e-10 gi|122144556|sp|Q148K0|TCEA2_BOVIN Transcription e ( 300) 291 70.0 2.4e-10 gi|1839468|gb|AAB47105.1| SII-T1=testis-specific t ( 111) 252 61.4 3.5e-08 gi|74210421|dbj|BAE23395.1| unnamed protein produc ( 273) 252 61.7 6.8e-08 gi|148675493|gb|EDL07440.1| transcription elongati ( 298) 252 61.7 7.2e-08 gi|28380213|sp|Q9QVN7|TCEA2_MOUSE Transcription el ( 299) 252 61.7 7.2e-08 gi|149636064|ref|XP_001507346.1| PREDICTED: simila ( 883) 251 61.9 1.9e-07 gi|149033908|gb|EDL88691.1| transcription elongati ( 180) 241 59.2 2.5e-07 gi|118100673|ref|XP_417425.2| PREDICTED: similar t ( 300) 243 59.8 2.7e-07 gi|126302941|ref|XP_001375502.1| PREDICTED: simila ( 359) 243 59.9 3.1e-07 gi|28380169|sp|Q63799|TCEA2_RAT Transcription elon ( 299) 241 59.4 3.6e-07 gi|114683109|ref|XP_001152553.1| PREDICTED: simila ( 303) 223 55.6 5.1e-06 gi|109091276|ref|XP_001082860.1| PREDICTED: transc ( 278) 211 53.1 2.8e-05 gi|89266837|emb|CAJ83973.1| transcription elongati ( 292) 211 53.1 2.9e-05 gi|28277993|gb|AAH46074.1| Transcription elongatio ( 300) 193 49.3 0.00041 gi|1373400|gb|AAC60115.1| transcription elongation ( 292) 181 46.7 0.0023 >>gi|114683107|ref|XP_001152936.1| PREDICTED: similar to (299 aa) initn: 328 init1: 304 opt: 315 Z-score: 368.3 bits: 75.0 E(): 7.2e-12 Smith-Waterman score: 315; 75.000% identity (80.882% similar) in 68 aa overlap (9-68:109-176) 10 20 30 ph0024 TQLALALCSRKRPELPRAPSTPRITTFPPVPVTCDAVR :::::::::::::::::::::::::::::: gi|114 LDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVR 80 90 100 110 120 130 40 50 60 70 80 90 ph0024 NKCREMLTAALQTDRE-------CGRPWLL-TPAVVHRVARAPACPQRPASSGVTVLPQP ::::::::::::::.. : : :.: : : . : gi|114 NKCREMLTAALQTDHDHVAIGADCERLWVLKTLARIFRDVGNTDMKYKNRVRSRISNLKD 140 150 160 170 180 190 100 110 120 130 ph0024 IAVALAGARGLCLDRGPLAGTRMCPLSCQGVLQAEGVAGGETSGGS gi|114 AKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDL 200 210 220 230 240 250 >>gi|29791737|gb|AAH50623.1| TCEA2 protein [Homo sapiens (242 aa) initn: 304 init1: 304 opt: 304 Z-score: 357.0 bits: 72.6 E(): 3.1e-11 Smith-Waterman score: 304; 95.652% identity (100.000% similar) in 46 aa overlap (9-54:110-155) 10 20 30 ph0024 TQLALALCSRKRPELPRAPSTPRITTFPPVPVTCDAVR :::::::::::::::::::::::::::::: gi|297 LDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVR 80 90 100 110 120 130 40 50 60 70 80 90 ph0024 NKCREMLTAALQTDRECGRPWLLTPAVVHRVARAPACPQRPASSGVTVLPQPIAVALAGA ::::::::::::::.. gi|297 NKCREMLTAALQTDHDHVAIGADCERLSAQIEEYILWVGAVGLGFWWSQEAAWPGALWWL 140 150 160 170 180 190 >>gi|55960605|emb|CAI13200.1| transcription elongation f (246 aa) initn: 304 init1: 304 opt: 304 Z-score: 356.9 bits: 72.6 E(): 3.1e-11 Smith-Waterman score: 304; 95.652% identity (100.000% similar) in 46 aa overlap (9-54:83-128) 10 20 30 ph0024 TQLALALCSRKRPELPRAPSTPRITTFPPVPVTCDAVR :::::::::::::::::::::::::::::: gi|559 LDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVR 60 70 80 90 100 110 40 50 60 70 80 90 ph0024 NKCREMLTAALQTDRECGRPWLLTPAVVHRVARAPACPQRPASSGVTVLPQPIAVALAGA ::::::::::::::.. gi|559 NKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDA 120 130 140 150 160 170 >>gi|16973073|emb|CAD11900.1| transcription elongation f (270 aa) initn: 328 init1: 304 opt: 304 Z-score: 356.3 bits: 72.7 E(): 3.3e-11 Smith-Waterman score: 304; 95.652% identity (100.000% similar) in 46 aa overlap (9-54:83-128) 10 20 30 ph0024 TQLALALCSRKRPELPRAPSTPRITTFPPVPVTCDAVR :::::::::::::::::::::::::::::: gi|169 LDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVR 60 70 80 90 100 110 40 50 60 70 80 90 ph0024 NKCREMLTAALQTDRECGRPWLLTPAVVHRVARAPACPQRPASSGVTVLPQPIAVALAGA ::::::::::::::.. gi|169 NKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDA 120 130 140 150 160 170 >>gi|193786100|dbj|BAG51383.1| unnamed protein product [ (272 aa) initn: 328 init1: 304 opt: 304 Z-score: 356.3 bits: 72.7 E(): 3.3e-11 Smith-Waterman score: 304; 95.652% identity (100.000% similar) in 46 aa overlap (9-54:83-128) 10 20 30 ph0024 TQLALALCSRKRPELPRAPSTPRITTFPPVPVTCDAVR :::::::::::::::::::::::::::::: gi|193 LDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVR 60 70 80 90 100 110 40 50 60 70 80 90 ph0024 NKCREMLTAALQTDRECGRPWLLTPAVVHRVARAPACPQRPASSGVTVLPQPIAVALAGA ::::::::::::::.. gi|193 NKCREMLTAALQTDHDHVAIGADCVRLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDA 120 130 140 150 160 170 >>gi|16973074|emb|CAD11901.1| transcription elongation f (272 aa) initn: 328 init1: 304 opt: 304 Z-score: 356.3 bits: 72.7 E(): 3.3e-11 Smith-Waterman score: 304; 95.652% identity (100.000% similar) in 46 aa overlap (9-54:83-128) 10 20 30 ph0024 TQLALALCSRKRPELPRAPSTPRITTFPPVPVTCDAVR :::::::::::::::::::::::::::::: gi|169 LDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVR 60 70 80 90 100 110 40 50 60 70 80 90 ph0024 NKCREMLTAALQTDRECGRPWLLTPAVVHRVARAPACPQRPASSGVTVLPQPIAVALAGA ::::::::::::::.. gi|169 NKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDA 120 130 140 150 160 170 >>gi|28380177|sp|Q15560|TCEA2_HUMAN Transcription elonga (299 aa) initn: 328 init1: 304 opt: 304 Z-score: 355.8 bits: 72.7 E(): 3.6e-11 Smith-Waterman score: 304; 95.652% identity (100.000% similar) in 46 aa overlap (9-54:110-155) 10 20 30 ph0024 TQLALALCSRKRPELPRAPSTPRITTFPPVPVTCDAVR :::::::::::::::::::::::::::::: gi|283 LDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVR 80 90 100 110 120 130 40 50 60 70 80 90 ph0024 NKCREMLTAALQTDRECGRPWLLTPAVVHRVARAPACPQRPASSGVTVLPQPIAVALAGA ::::::::::::::.. gi|283 NKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDA 140 150 160 170 180 190 >>gi|119595576|gb|EAW75170.1| transcription elongation f (324 aa) initn: 328 init1: 304 opt: 304 Z-score: 355.3 bits: 72.7 E(): 3.8e-11 Smith-Waterman score: 304; 95.652% identity (100.000% similar) in 46 aa overlap (9-54:110-155) 10 20 30 ph0024 TQLALALCSRKRPELPRAPSTPRITTFPPVPVTCDAVR :::::::::::::::::::::::::::::: gi|119 LDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVR 80 90 100 110 120 130 40 50 60 70 80 90 ph0024 NKCREMLTAALQTDRECGRPWLLTPAVVHRVARAPACPQRPASSGVTVLPQPIAVALAGA ::::::::::::::.. gi|119 NKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDA 140 150 160 170 180 190 >>gi|109133624|ref|XP_001114226.1| PREDICTED: similar to (43 aa) initn: 289 init1: 289 opt: 289 Z-score: 349.8 bits: 68.8 E(): 7.6e-11 Smith-Waterman score: 289; 100.000% identity (100.000% similar) in 42 aa overlap (10-51:1-42) 10 20 30 40 50 60 ph0024 TQLALALCSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDRECGRPWL :::::::::::::::::::::::::::::::::::::::::: gi|109 RKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLTAALQTA 10 20 30 40 70 80 90 100 110 120 ph0024 LTPAVVHRVARAPACPQRPASSGVTVLPQPIAVALAGARGLCLDRGPLAGTRMCPLSCQG >>gi|109091272|ref|XP_001082986.1| PREDICTED: transcript (272 aa) initn: 318 init1: 294 opt: 294 Z-score: 344.9 bits: 70.6 E(): 1.4e-10 Smith-Waterman score: 294; 100.000% identity (100.000% similar) in 43 aa overlap (9-51:83-125) 10 20 30 ph0024 TQLALALCSRKRPELPRAPSTPRITTFPPVPVTCDAVR :::::::::::::::::::::::::::::: gi|109 LDASDAKARERGRGTPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVR 60 70 80 90 100 110 40 50 60 70 80 90 ph0024 NKCREMLTAALQTDRECGRPWLLTPAVVHRVARAPACPQRPASSGVTVLPQPIAVALAGA ::::::::::::: gi|109 NKCREMLTAALQTAHDHVAIGADCQRLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDA 120 130 140 150 160 170 136 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 10:57:05 2008 done: Wed Aug 13 11:00:16 2008 Total Scan time: 555.590 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]