hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-11062122/chunk_1/iprscan-20080813-11062122.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ph00327 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01608.8.ls I/LWEQ domain 434.5 1.3e-127 1 PF01608.8.fs I/LWEQ domain 432.6 4.9e-127 1 PF07651.6.ls ANTH domain 394.6 1.3e-115 1 PF07651.6.fs ANTH domain 392.8 4.6e-115 1 PF01417.11.fs ENTH domain 39.4 1.6e-10 1 PF01417.11.ls ENTH domain 33.2 2.5e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07651.6.fs 1/1 60 332 .. 1 301 [] 392.8 4.6e-115 PF01417.11.fs 1/1 60 148 .. 1 101 [. 39.4 1.6e-10 PF07651.6.ls 1/1 60 332 .. 1 301 [] 394.6 1.3e-115 PF01417.11.ls 1/1 60 179 .. 1 140 [] 33.2 2.5e-08 PF01608.8.ls 1/1 842 1035 .. 1 202 [] 434.5 1.3e-127 PF01608.8.fs 1/1 842 1035 .. 1 202 [] 432.6 4.9e-127 Alignments of top-scoring domains: PF07651.6.fs: domain 1 of 1, from 60 to 332: score 392.8, E = 4.6e-115 *->dsdLevAVvKATshedevPpKekhvreIlvtTssnspakvaacfwal +++++v++ KA+++ +ev++Kekh+r+++++T++ +k a++fw++ ph00327 60 ERTQTVSINKAINT-QEVAVKEKHARTCILGTHH---EKGAQTFWSV 102 srRlpltrnwvValKaLiliHklLreGhpsvlqellrarrrissllriss + Rlpl++n v+++K+++++HklLr+Ghp+vl+++lr+r+++s+++r+++ ph00327 103 VNRLPLSSNAVLCWKFCHVFHKLLRDGHPNVLKDSLRYRNELSDMSRMWG 152 RftfrddsssltwdygafiRaYakYLdeRlefhrklpvdpGtferveygt +l+ +yg+++ Y k+L +++e+h k+p++pG++++++++ ph00327 153 ---------HLSEGYGQLCSIYLKLLRTKMEYHTKNPRFPGNLQMSDRQ- 192 stakkslvavddpnerNNYyeltmsmedlLdkipkLQklldrllkckptg +++a++ ++ NN+++lt++m+d+L++ + L ++++ +l+ ++ ph00327 193 -----LDEAGESDV--NNFFQLTVEMFDYLECELNLFQTVFNSLD---MS 232 nals....neciiaAlillikEsfglYkainegiinLlekffedklskhd +++s + ++c++a+li++i+++++lY+++++++++L+++++ ph00327 233 RSVSvtaaGQCRLAPLIQVILDCSHLYDYTVKLLFKLHSCLPA------- 275 AdaaldiykrfskQferLkeFyevCkslgylrsletIPkLphiPpnllea d+++++++rf++Qf++Lk+ ++++++l+y+++l++IP+Lp++Ppn+l+a ph00327 276 -DTLQGHRDRFMEQFTKLKDLFYRSSNLQYFKRLIQIPQLPENPPNFLRA 324 leeylrdp<-* + + +++ ph00327 325 SALSEHIS 332 PF01417.11.fs: domain 1 of 1, from 60 to 148: score 39.4, E = 1.6e-10 *->yseaeikVreATnnDpwGPsgklmaeIaeaTyneklyvefeeimsvL ++ +++ +A+n+++ + ++k+ + + +T++ek++ +f++++++L ph00327 60 ERTQTVSINKAINTQEVAVKEKHARTCILGTHHEKGAQTFWSVVNRL 106 wkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfnI + + +n +K++++ ++Ll++G+++v++d +++ ++ ph00327 107 P---L------SSNAVLCWKFCHVFHKLLRDGHPNVLKDSLRYRN---EL 144 rtLe<-* + ++ ph00327 145 SDMS 148 PF07651.6.ls: domain 1 of 1, from 60 to 332: score 394.6, E = 1.3e-115 *->dsdLevAVvKATshedevPpKekhvreIlvtTssnspakvaacfwal +++++v++ KA+++ +ev++Kekh+r+++++T++ +k a++fw++ ph00327 60 ERTQTVSINKAINT-QEVAVKEKHARTCILGTHH---EKGAQTFWSV 102 srRlpltrnwvValKaLiliHklLreGhpsvlqellrarrrissllriss + Rlpl++n v+++K+++++HklLr+Ghp+vl+++lr+r+++s+++r+++ ph00327 103 VNRLPLSSNAVLCWKFCHVFHKLLRDGHPNVLKDSLRYRNELSDMSRMWG 152 RftfrddsssltwdygafiRaYakYLdeRlefhrklpvdpGtferveygt +l+ +yg+++ Y k+L +++e+h k+p++pG++++++++ ph00327 153 ---------HLSEGYGQLCSIYLKLLRTKMEYHTKNPRFPGNLQMSDRQ- 192 stakkslvavddpnerNNYyeltmsmedlLdkipkLQklldrllkckptg +++a++ ++ NN+++lt++m+d+L++ + L ++++ +l+ ++ ph00327 193 -----LDEAGESDV--NNFFQLTVEMFDYLECELNLFQTVFNSLD---MS 232 nals....neciiaAlillikEsfglYkainegiinLlekffedklskhd +++s + ++c++a+li++i+++++lY+++++++++L+++++ ph00327 233 RSVSvtaaGQCRLAPLIQVILDCSHLYDYTVKLLFKLHSCLPA------- 275 AdaaldiykrfskQferLkeFyevCkslgylrsletIPkLphiPpnllea d+++++++rf++Qf++Lk+ ++++++l+y+++l++IP+Lp++Ppn+l+a ph00327 276 -DTLQGHRDRFMEQFTKLKDLFYRSSNLQYFKRLIQIPQLPENPPNFLRA 324 leeylrdp<-* + + +++ ph00327 325 SALSEHIS 332 PF01417.11.ls: domain 1 of 1, from 60 to 179: score 33.2, E = 2.5e-08 *->yseaeikVreATnnDpwGPsgklmaeIaeaTyneklyvefeeimsvL ++ +++ +A+n+++ + ++k+ + + +T++ek++ +f++++++L ph00327 60 ERTQTVSINKAINTQEVAVKEKHARTCILGTHHEKGAQTFWSVVNRL 106 wkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfnI + + +n +K++++ ++Ll++G+++v++d +++ ++ ph00327 107 P---L------SSNAVLCWKFCHVFHKLLRDGHPNVLKDSLRYRN---EL 144 rtLedFqyVfiDenGkmlrfDqGinVRkKAkelleLLnDderL<-* + ++ + +G+ l +G+ ++ k+l ++++ + + ph00327 145 SDMS--RM-----WGH-LSEGYGQLCSIYLKLLRTKMEYHTKN 179 PF01608.8.ls: domain 1 of 1, from 842 to 1035: score 434.5, E = 1.3e-127 *->VnesILsaakaImkAiaaLVkAAsaaQrEivaqGrgsaspaefYkkn Vne+IL++++++m+Ai++L++A++++QrEiv++Grg+asp+efY+kn ph00327 842 VNERILGCCTSLMQAIQVLIVASKDLQREIVESGRGTASPKEFYAKN 888 srWTEGLISAAKaVgaAttvLvEAAdkvVtsEDnGkgsfEeLIVaakeVA srWTEGLISA+KaVg+++tv+v+AAd vV+ G+g+fEeL+V+++e+A ph00327 889 SRWTEGLISASKAVGWGATVMVDAADLVVQ----GRGKFEELMVCSHEIA 934 ASTAQLVaASrVKAGDDkdSkaAldrLqaAakaVneAtanLVaaaksgai ASTAQLVaAS+VKA DkdS++ l++Lq+A+++Vn+Ata++Va+++sg++ ph00327 935 ASTAQLVAASKVKA--DKDSPN-LAQLQQASRGVNQATAGVVASTISGKS 981 fdiedqqeedfsslslhglKaqEmEqQveiLkLEkeLeeARkkLaelRKq + ie+++++dfss++l+++K+qEm++Qv++L+LE+eL+++R+kL+elRK+ ph00327 982 Q-IEETDNMDFSSMTLTQIKRQEMDSQVRVLELENELQKERQKLGELRKK 1030 hYela<-* hYela ph00327 1031 HYELA 1035 PF01608.8.fs: domain 1 of 1, from 842 to 1035: score 432.6, E = 4.9e-127 *->VnesILsaakaImkAiaaLVkAAsaaQrEivaqGrgsaspaefYkkn Vne+IL++++++m+Ai++L++A++++QrEiv++Grg+asp+efY+kn ph00327 842 VNERILGCCTSLMQAIQVLIVASKDLQREIVESGRGTASPKEFYAKN 888 srWTEGLISAAKaVgaAttvLvEAAdkvVtsEDnGkgsfEeLIVaakeVA srWTEGLISA+KaVg+++tv+v+AAd vV+ G+g+fEeL+V+++e+A ph00327 889 SRWTEGLISASKAVGWGATVMVDAADLVVQ----GRGKFEELMVCSHEIA 934 ASTAQLVaASrVKAGDDkdSkaAldrLqaAakaVneAtanLVaaaksgai ASTAQLVaAS+VKA DkdS++ l++Lq+A+++Vn+Ata++Va+++sg++ ph00327 935 ASTAQLVAASKVKA--DKDSPN-LAQLQQASRGVNQATAGVVASTISGKS 981 fdiedqqeedfsslslhglKaqEmEqQveiLkLEkeLeeARkkLaelRKq + ie+++++dfss++l+++K+qEm++Qv++L+LE+eL+++R+kL+elRK+ ph00327 982 Q-IEETDNMDFSSMTLTQIKRQEMDSQVRVLELENELQKERQKLGELRKK 1030 hYela<-* hYela ph00327 1031 HYELA 1035 //