hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-11131307/chunk_1/iprscan-20080813-11131307.nocrc
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Query sequence: ph00421
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF02770.9.fs  Acyl-CoA dehydrogenase, middle domain      95.5    1.5e-26   1
PF02770.9.ls  Acyl-CoA dehydrogenase, middle domain      97.4      4e-26   1
PF02771.7.fs  Acyl-CoA dehydrogenase, N-terminal doma    66.1    9.5e-18   1
PF02771.7.ls  Acyl-CoA dehydrogenase, N-terminal doma    65.4    1.7e-16   1
PF00441.14.fs Acyl-CoA dehydrogenase, C-terminal doma    18.0    0.00012   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF02771.7.ls    1/1      15   123 ..     1   128 []    65.4  1.7e-16
PF02771.7.fs    1/1      35   123 ..    28   128 .]    66.1  9.5e-18
PF02770.9.fs    1/1     127   180 ..     1    60 []    95.5  1.5e-26
PF02770.9.ls    1/1     127   180 ..     1    60 []    97.4    4e-26
PF00441.14.fs   1/1     240   271 ..     1    33 [.    18.0  0.00012

Alignments of top-scoring domains:
PF02771.7.ls: domain 1 of 1, from 15 to 123: score 65.4, E = 1.7e-16
                   *->seEqemlratvREkFAqeEiaPyaaeGRRvDktsefpalrelikaLg
                        E +++++ v  kF+ eE+     + R++D++++ p   e +++L 
     ph00421    15    -NEINQFLGPVE-KFFTEEV-----DSRKIDQEGKIP--DETLEKLK 52   

                   klGLlgihvPEeyRGGaGadylaRFmLHAQVaalviEElarvcAstgvil
                    lGL g+ vPEey GG+G +           +    E +++ ++s  v+l
     ph00421    53 SLGLFGLQVPEEY-GGLGFSNTM--------YSRLGEIISM-DGSITVTL 92   

                   svhssLgqnpilkfGseEQKkkyLPqltsGe<-*
                   ++h ++g+ +i+ +G+eEQK+kyLP+l+sGe   
     ph00421    93 AAHQAIGLKGIILAGTEEQKAKYLPKLASGE    123  

PF02771.7.fs: domain 1 of 1, from 35 to 123: score 66.1, E = 9.5e-18
                   *->RRvDktsefpalrelikaLgklGLlgihvPEeyRGGaGadylaRFmL
                      R++D++++ p   e +++L  lGL g+ vPEey GG+G +       
     ph00421    35    RKIDQEGKIP--DETLEKLKSLGLFGLQVPEEY-GGLGFSNTM---- 74   

                   HAQVaalviEElarvcAstgvilsvhssLgqnpilkfGseEQKkkyLPql
                       +    E +++ ++s  v+l++h ++g+ +i+ +G+eEQK+kyLP+l
     ph00421    75 ----YSRLGEIISM-DGSITVTLAAHQAIGLKGIILAGTEEQKAKYLPKL 119  

                   tsGe<-*
                   +sGe   
     ph00421   120 ASGE    123  

PF02770.9.fs: domain 1 of 1, from 127 to 180: score 95.5, E = 1.5e-26
                   *->afalTEPgaGSDaaalrTtiAvrddGdddhyvlNTPGsKiwItnagp
                      af+lTEP +GSDaa++r + A+    d  hy+lN  GsK+wItn+g 
     ph00421   127    AFCLTEPASGSDAASIRSR-ATL-SEDKKHYILN--GSKVWITNGG- 168  

                   vADvfiVlArlTd<-*
                    A++f+V+A+ T+   
     ph00421   169 LANIFTVFAK-TE    180  

PF02770.9.ls: domain 1 of 1, from 127 to 180: score 97.4, E = 4e-26
                   *->afalTEPgaGSDaaalrTtiAvrddGdddhyvlNTPGsKiwItnagp
                      af+lTEP +GSDaa++r + A+    d  hy+lN  GsK+wItn+g 
     ph00421   127    AFCLTEPASGSDAASIRSR-ATL-SEDKKHYILN--GSKVWITNGG- 168  

                   vADvfiVlArlTd<-*
                    A++f+V+A+ T+   
     ph00421   169 LANIFTVFAK-TE    180  

PF00441.14.fs: domain 1 of 1, from 240 to 271: score 18.0, E = 0.00012
                   *->grGfrvametvlnheRlaiaagalGlarralee<-*
                      g+Gf+vam+  ln +R+++++  +Gl  r + +   
     ph00421   240    GDGFKVAMNI-LNSGRFSMGSVVAGLLKRLIGR    271  

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