hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-11193195/chunk_1/iprscan-20080813-11193195.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ph00435
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00225.13.ls Kinesin motor domain                           565.6   4.5e-167   1
PF00225.13.fs Kinesin motor domain                           564.0   1.4e-166   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00225.13.fs   1/1      26   339 ..     1   424 []   564.0 1.4e-166
PF00225.13.ls   1/1      26   339 ..     1   424 []   565.6 4.5e-167

Alignments of top-scoring domains:
PF00225.13.fs: domain 1 of 1, from 26 to 339: score 564.0, E = 1.4e-166
                   *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe
                      R+RPln+ E+ rg +++        + +++   + k ++FD+VF+p+
     ph00435    26    RFRPLNQAEILRGDKFI-----PIFQGDDSVvIGGKPYVFDRVFPPN 67   

                   atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe
                   +t         qe+vy  +a ++v++vl+GyN+tIFAYGQT SGKT+TMe
     ph00435    68 TT---------QEQVYHACAMQIVKDVLAGYNGTIFAYGQTSSGKTHTME 108  

                   GstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKPk
                   G+                +++ +GiiPR+ +d+F++i             
     ph00435   109 GKLH--------------DPQLMGIIPRIARDIFNHI------------- 131  

                   lnekgwellncqetligvsfdtrglsSdly.v.edlefsvkvSylEIYNE
                                                y+++e+lef++kvSy+EIY  
     ph00435   132 -----------------------------YsMdENLEFHIKVSYFEIYLD 152  

                   kirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLte
                   kirDLL+ +             k++  L ++eD++r      ++VkG+te
     ph00435   153 KIRDLLDVT-------------KTN--LSVHEDKNR-----VPFVKGCTE 182  

                   veVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdtt
                     V+s+ee+l+++++G +nR+va T+mNe+SSRSH+iF i ++q+n +  
     ph00435   183 RFVSSPEEILDVIDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENME-- 230  

                   gsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaanI
                              +e+ +++kL+LVDLAGSE++skTg   A+g  L Ea+nI
     ph00435   231 -----------TEQKLSGKLYLVDLAGSEKVSKTG---AEGAVLDEAKNI 266  

                   NkSLsaLGnVInALadnqkssHiPYRDSKLTrLLQDSLGGGDNsKTlMIa
                   NkSLsaLGnVI+ALa++  +s++PYRDSK Tr+LQDSLGG  N++T M+ 
     ph00435   267 NKSLSALGNVISALAEG-TKSYVPYRDSKMTRILQDSLGG--NCRTTMFI 313  

                   niSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   ++SPss+    n  ET sTL F++RAK Ik   
     ph00435   314 CCSPSSY----NDAETKSTLMFGQRAKTIK    339  

PF00225.13.ls: domain 1 of 1, from 26 to 339: score 565.6, E = 4.5e-167
                   *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe
                      R+RPln+ E+ rg +++        + +++   + k ++FD+VF+p+
     ph00435    26    RFRPLNQAEILRGDKFI-----PIFQGDDSVvIGGKPYVFDRVFPPN 67   

                   atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe
                   +t         qe+vy  +a ++v++vl+GyN+tIFAYGQT SGKT+TMe
     ph00435    68 TT---------QEQVYHACAMQIVKDVLAGYNGTIFAYGQTSSGKTHTME 108  

                   GstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKPk
                   G+                +++ +GiiPR+ +d+F++i             
     ph00435   109 GKLH--------------DPQLMGIIPRIARDIFNHI------------- 131  

                   lnekgwellncqetligvsfdtrglsSdly.v.edlefsvkvSylEIYNE
                                                y+++e+lef++kvSy+EIY  
     ph00435   132 -----------------------------YsMdENLEFHIKVSYFEIYLD 152  

                   kirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLte
                   kirDLL+ +             k++  L ++eD++r      ++VkG+te
     ph00435   153 KIRDLLDVT-------------KTN--LSVHEDKNR-----VPFVKGCTE 182  

                   veVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdtt
                     V+s+ee+l+++++G +nR+va T+mNe+SSRSH+iF i ++q+n +  
     ph00435   183 RFVSSPEEILDVIDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENME-- 230  

                   gsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaanI
                              +e+ +++kL+LVDLAGSE++skTg   A+g  L Ea+nI
     ph00435   231 -----------TEQKLSGKLYLVDLAGSEKVSKTG---AEGAVLDEAKNI 266  

                   NkSLsaLGnVInALadnqkssHiPYRDSKLTrLLQDSLGGGDNsKTlMIa
                   NkSLsaLGnVI+ALa++  +s++PYRDSK Tr+LQDSLGG  N++T M+ 
     ph00435   267 NKSLSALGNVISALAEG-TKSYVPYRDSKMTRILQDSLGG--NCRTTMFI 313  

                   niSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   ++SPss+    n  ET sTL F++RAK Ik   
     ph00435   314 CCSPSSY----NDAETKSTLMFGQRAKTIK    339  

//