hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-11193195/chunk_1/iprscan-20080813-11193195.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ph00435
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 590.5     6e-173   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1      18   346 ..     1   404 []   590.5   6e-173

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 18 to 346: score 590.5, E = 6e-173
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv....tvtvn...
                      +++I+V +R+   RPln+ E+ ++     + +  ++++++v++ +++
     ph00435    18    ECSIKVLCRF---RPLNQAEILRG----DKFIPIFqgddSVVIGgkp 57   

                   FtFDkVFWrydvddpsasQedVFeevaaPLvdsaldGYNvaTIFAYGQTG
                   + FD+VF      +p+++Qe+V++ +a ++v ++l+GYN+ TIFAYGQT 
     ph00435    58 YVFDRVF------PPNTTQEQVYHACAMQIVKDVLAGYNG-TIFAYGQTS 100  

                   SGKTyTMsGtptdpgilsndladitpdepGiIPRaledlFekide.....
                   SGKT+TM+G   dp            + +GiIPR+ +d+F++i + +++ 
     ph00435   101 SGKTHTMEGKLHDP------------QLMGIIPRIARDIFNHIYSmdenl 138  

                   .fsVkvSylEIYNEkirDLLspspenSksrGkhakqsskkkLrirEdkng
                   +f++kvSy+EIY +kirDLL+ +++n               L ++Edkn 
     ph00435   139 eFHIKVSYFEIYLDKIRDLLDVTKTN---------------LSVHEDKN- 172  

                   nrhdapkLtrlrgqggvyVvGLtevsVsSaeevlellerGnknRtvaaTk
                                 + ++V+G+te+ VsS+ee+l+++++G++nR+va T+
     ph00435   173 --------------RVPFVKGCTERFVSSPEEILDVIDEGKSNRHVAVTN 208  

                   mNeeSSRSHaiFtitleqkeklepiadektesstnegteqiksskLnLVD
                   mNe+SSRSH+iF i ++q+               n +teq++s+kL+LVD
     ph00435   209 MNEHSSRSHSIFLINIKQE---------------NMETEQKLSGKLYLVD 243  

                   LAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVInALaddshdsaese
                   LAGSE++skTg  aeG  L Ea+nINkSL+aLGnVI+ALa+         
     ph00435   244 LAGSEKVSKTG--AEGAVLDEAKNINKSLSALGNVISALAE--------- 282  

                   atkqaggkssHIPYRDSKLTrLLQdSLGGNsKTlMIanvSPsssnyeETl
                         g +s++PYRDSK Tr+LQdSLGGN++T+M++++SPss+n +ET 
     ph00435   283 ------GTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETK 326  

                   sTLrFAsRaksIknkpavne<-*
                   sTL F++Rak+Ikn+++vn    
     ph00435   327 STLMFGQRAKTIKNTASVNL    346  

//