hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-11253932/chunk_1/iprscan-20080813-11253932.nocrc
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Query sequence: ph00435y1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 590.5     6e-173   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1      31   359 ..     1   404 []   590.5   6e-173

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 31 to 359: score 590.5, E = 6e-173
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv....tvtvn...
                      +++I+V +R+   RPln+ E+ ++     + +  ++++++v++ +++
   ph00435y1    31    ECSIKVLCRF---RPLNQAEILRG----DKFIPIFqgddSVVIGgkp 70   

                   FtFDkVFWrydvddpsasQedVFeevaaPLvdsaldGYNvaTIFAYGQTG
                   + FD+VF      +p+++Qe+V++ +a ++v ++l+GYN+ TIFAYGQT 
   ph00435y1    71 YVFDRVF------PPNTTQEQVYHACAMQIVKDVLAGYNG-TIFAYGQTS 113  

                   SGKTyTMsGtptdpgilsndladitpdepGiIPRaledlFekide.....
                   SGKT+TM+G   dp            + +GiIPR+ +d+F++i + +++ 
   ph00435y1   114 SGKTHTMEGKLHDP------------QLMGIIPRIARDIFNHIYSmdenl 151  

                   .fsVkvSylEIYNEkirDLLspspenSksrGkhakqsskkkLrirEdkng
                   +f++kvSy+EIY +kirDLL+ +++n               L ++Edkn 
   ph00435y1   152 eFHIKVSYFEIYLDKIRDLLDVTKTN---------------LSVHEDKN- 185  

                   nrhdapkLtrlrgqggvyVvGLtevsVsSaeevlellerGnknRtvaaTk
                                 + ++V+G+te+ VsS+ee+l+++++G++nR+va T+
   ph00435y1   186 --------------RVPFVKGCTERFVSSPEEILDVIDEGKSNRHVAVTN 221  

                   mNeeSSRSHaiFtitleqkeklepiadektesstnegteqiksskLnLVD
                   mNe+SSRSH+iF i ++q+               n +teq++s+kL+LVD
   ph00435y1   222 MNEHSSRSHSIFLINIKQE---------------NMETEQKLSGKLYLVD 256  

                   LAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVInALaddshdsaese
                   LAGSE++skTg  aeG  L Ea+nINkSL+aLGnVI+ALa+         
   ph00435y1   257 LAGSEKVSKTG--AEGAVLDEAKNINKSLSALGNVISALAE--------- 295  

                   atkqaggkssHIPYRDSKLTrLLQdSLGGNsKTlMIanvSPsssnyeETl
                         g +s++PYRDSK Tr+LQdSLGGN++T+M++++SPss+n +ET 
   ph00435y1   296 ------GTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETK 339  

                   sTLrFAsRaksIknkpavne<-*
                   sTL F++Rak+Ikn+++vn    
   ph00435y1   340 STLMFGQRAKTIKNTASVNL    359  

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