hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-11384851/chunk_1/iprscan-20080813-11384851.nocrc
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Query sequence: ph00555
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.ls Protein kinase domain                       252.1    1.1e-72   1
PF00069.15.fs Protein kinase domain                       250.2    3.9e-72   1
PF07714.7.fs Protein tyrosine kinase                      75.4    8.5e-22   1
PF07714.7.ls Protein tyrosine kinase                      70.9    3.9e-18   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.fs   1/1       7   255 ..     1   287 []   250.2  3.9e-72
PF07714.7.fs   1/1       7   201 ..     1   218 [.    75.4  8.5e-22
PF00069.15.ls   1/1       7   255 ..     1   287 []   252.1  1.1e-72
PF07714.7.ls   1/1       7   253 ..     1   272 []    70.9  3.9e-18

Alignments of top-scoring domains:
PF00069.15.fs: domain 1 of 1, from 7 to 255: score 250.2, E = 3.9e-72
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y++ ek+G+G++GtV+ a+++  g++VA+K+i+++k+ +k+++++  
     ph00555     7    YTRYEKIGQGASGTVFTATDVALGQKVAIKQINLQKQPKKELIIN-- 51   

                   lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse
                     Ei ++k+L+ pNIv ++d++  +d+l +V Ey+  G    +L d+++ 
     ph00555    52 --EILVMKELKNPNIVNFLDSYLVGDELFVVVEYLARG----SLTDVVT- 94   

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv
                      ++++  +e ++  ++++ l++le+LH+n +iHRD+K++ +Ll  +g 
     ph00555    95 ---ETCM--DEAQIAAVCRESLQALEFLHANQVIHRDIKSDSVLLGMEGS 139  

                   vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD
                   v    K++DFG+++++ t+ +s+ +t+  Tp++mAPEv+  ++ yg+kv 
     ph00555   140 V----KLTDFGFCAQI-TpEQSkRSTVIRTPYWMAPEVVT-RKAYGPKVN 183  

                   vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds
                   vWSlG++  e++ G+pP+ +e   ++l+ l li+ ++ p+l  ++  +  
     ph00555   184 VWSLGIMATEMVEGEPPYLNE---NpLRALCLIATNGIPELQNPETLSPI 230  

                   isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                    +                  ++cL+ D +kR +a+e+lqH ++   
     ph00555   231 FR------------------DRCLETDVEKRGSAKELLQHLFL    255  

PF07714.7.fs: domain 1 of 1, from 7 to 201: score 75.4, E = 8.5e-22
                   *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie
                       +  +k+G+Ga G+V+ +t        ++kVA+K ++  +  ++   
     ph00555     7    YTRYEKIGQGASGTVFTATDV----ALGQKVAIKQINL-QKQPK--- 45   

                   redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL
                   +e  ++E+ +Mk+l ++pNiV++l   +  g+     l++V+Ey + G+L
     ph00555    46 KELIINEILVMKEL-KNPNIVNFLDSYLV-GDE----LFVVVEYLARGSL 89   

                   ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs
                    d   +       +  ++   +++  +++e+L++++ +HRD+    +L++
     ph00555    90 TDVVTET----CMDEAQIAAVCRESLQALEFLHANQVIHRDIKSDSVLLG 135  

                   enlvVKIsDFGLaRdiynddyYvrkkgggklPv....kWmAPEslkygkF
                    ++ VK +DFG + +i       +  ++ +  v +++ WmAPE+   + +
     ph00555   136 MEGSVKLTDFGFCAQI-------TPEQSKRSTVirtpYWMAPEVVTRKAY 178  

                   tskSDVWSFGVlLWEiftlGeqPFY<-*
                     k  VWS G++  E++  Ge+P Y   
     ph00555   179 GPKVNVWSLGIMATEMVE-GEPP-Y    201  

PF00069.15.ls: domain 1 of 1, from 7 to 255: score 252.1, E = 1.1e-72
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y++ ek+G+G++GtV+ a+++  g++VA+K+i+++k+ +k+++++  
     ph00555     7    YTRYEKIGQGASGTVFTATDVALGQKVAIKQINLQKQPKKELIIN-- 51   

                   lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse
                     Ei ++k+L+ pNIv ++d++  +d+l +V Ey+  G    +L d+++ 
     ph00555    52 --EILVMKELKNPNIVNFLDSYLVGDELFVVVEYLARG----SLTDVVT- 94   

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv
                      ++++  +e ++  ++++ l++le+LH+n +iHRD+K++ +Ll  +g 
     ph00555    95 ---ETCM--DEAQIAAVCRESLQALEFLHANQVIHRDIKSDSVLLGMEGS 139  

                   vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD
                   v    K++DFG+++++ t+ +s+ +t+  Tp++mAPEv+  ++ yg+kv 
     ph00555   140 V----KLTDFGFCAQI-TpEQSkRSTVIRTPYWMAPEVVT-RKAYGPKVN 183  

                   vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds
                   vWSlG++  e++ G+pP+ +e   ++l+ l li+ ++ p+l  ++  +  
     ph00555   184 VWSLGIMATEMVEGEPPYLNE---NpLRALCLIATNGIPELQNPETLSPI 230  

                   isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                    +                  ++cL+ D +kR +a+e+lqH ++   
     ph00555   231 FR------------------DRCLETDVEKRGSAKELLQHLFL    255  

PF07714.7.ls: domain 1 of 1, from 7 to 253: score 70.9, E = 3.9e-18
                   *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie
                       +  +k+G+Ga G+V+ +t        ++kVA+K ++  +  ++   
     ph00555     7    YTRYEKIGQGASGTVFTATDV----ALGQKVAIKQINL-QKQPK--- 45   

                   redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL
                   +e  ++E+ +Mk+l ++pNiV++l   +  g+     l++V+Ey + G+L
     ph00555    46 KELIINEILVMKEL-KNPNIVNFLDSYLV-GDE----LFVVVEYLARGSL 89   

                   ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs
                    d   +       +  ++   +++  +++e+L++++ +HRD+    +L++
     ph00555    90 TDVVTET----CMDEAQIAAVCRESLQALEFLHANQVIHRDIKSDSVLLG 135  

                   enlvVKIsDFGLaRdiynddyYvrkkgggklPv....kWmAPEslkygkF
                    ++ VK +DFG + +i       +  ++ +  v +++ WmAPE+   + +
     ph00555   136 MEGSVKLTDFGFCAQI-------TPEQSKRSTVirtpYWMAPEVVTRKAY 178  

                   tskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenC
                     k  VWS G++  E++  Ge+P Y +  + + l l++ +G    + + +
     ph00555   179 GPKVNVWSLGIMATEMVE-GEPP-YLNENPLRALCLIATNGIPELQNPET 226  

                   PdelYdlMlqCWaedPedRPtFselveeL<-*
                      + +   +C + d e+R + +el+++L   
     ph00555   227 LSPIFR--DRCLETDVEKRGSAKELLQHL    253  

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