hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-11384851/chunk_1/iprscan-20080813-11384851.nocrc
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Query sequence: ph00555
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 265.4    4.5e-75   1
SM00219                                                  66.4      3e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1       7   253 ..     1   280 []    66.4    3e-15
SM00220    1/1       7   255 ..     1   231 []   265.4  4.5e-75

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 7 to 253: score 66.4, E = 3e-15
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda...keeFlrEa
                       t  +k+G Ga G+V+ +t    +++VA+K ++  ++++ke +++E+
     ph00555     7    YTRYEKIGQGASGTVFTATDValgQKVAIKQINLQKqpkKELIINEI 53   

                   kiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLr
                    +Mk+l  k+pNiV++l   + +       + l++v+Ey + G+L d   
     ph00555    54 LVMKEL--KNPNIVNFLDSYLVG-------DELFVVVEYLARGSLTDVVT 94   

                   knrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvKI
                   ++      ++    +    +  e+L+ ++++HRD+    +L+g ++ vK 
     ph00555    95 ETC--MDEAQIAAVCRESLQALEFLHANQVIHRDIKSDSVLLGMEGSVKL 142  

                   sDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkFt
                   +DFG +  ++ +       + +r+             WmAPE+   + + 
     ph00555   143 TDFGFCAQITPE-------QSKRS----TVI--RTPYWMAPEVVTRKAYG 179  

                   skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpkPe
                   +k  VWS G++  E+   Ge+PY +      ++ ++l ++ + + ++   
     ph00555   180 PKVNVWSLGIMATEMVE-GEPPYLN-----ENPLRALCLIATNGIPELQN 223  

                   ndlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                           +  + +++   +C + d e+R + +el + l   
     ph00555   224 P-------ETLSPIFR--DRCLETDVEKRGSAKELLQHL    253  

SM00220: domain 1 of 1, from 7 to 255: score 265.4, E = 4.5e-75
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.......erilrEi
                      Y+  +k+G+Ga G+V+ a+d+  g++vAiK+i+ ++++++e i++Ei
     ph00555     7    YTRYEKIGQGASGTVFTATDVALGQKVAIKQINlqkqpkkELIINEI 53   

                   kiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrgl
                    ++k+ + PNIV+++d++  +d+l++V Ey+    G+L d+  +      
     ph00555    54 LVMKElKNPNIVNFLDSYLVgDELFVVVEYLAR--GSLTDVVTETC---- 97   

                   rkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaD
                      ++E +++ ++r+ l+aLe+LH +++iHRD+K + +LL  ++ vKl+D
     ph00555    98 ---MDEaQIAAVCRESLQALEFLHANQVIHRDIKSDSVLLGMegSVKLTD 144  

                   FGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyE
                   FG+++q+++++++++t++ Tp++mAPEv++++ Yg+ +v +WSlG++  E
     ph00555   145 FGFCAQItpeqskrSTVIRTPYWMAPEVVtrkAYGP-KVNVWSLGIMATE 193  

                   lltGkpPFp..qldlifkkig.............SpeakdLikklLvkdP
                   ++ G+pP+ ++++ + + +i +++ ++  ++++ Sp ++   +++L+ d 
     ph00555   194 MVEGEPPYLneNPLRALCLIAtngipelqnpetlSPIFR---DRCLETDV 240  

                   ekRlta.eaLedeldikaHPff<-*
                   ekR +a+e+L+       H f+   
     ph00555   241 EKRGSAkELLQ-------HLFL    255  

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