# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oph00583.fasta.nr -Q ph00583.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ph00583, 321 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842735 sequences Expectation_n fit: rho(ln(x))= 5.2098+/-0.000181; mu= 9.6663+/- 0.010 mean_var=67.7904+/-13.079, 0's: 24 Z-trim: 26 B-trim: 0 in 0/67 Lambda= 0.155772 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087390|dbj|BAD92142.1| Bardet-Biedl syndrome ( 321) 2135 488.4 6.9e-136 gi|20454827|sp|Q9BXC9|BBS2_HUMAN Bardet-Biedl synd ( 721) 1825 418.9 1.2e-114 gi|114662618|ref|XP_510980.2| PREDICTED: Bardet-Bi ( 721) 1825 418.9 1.2e-114 gi|55731294|emb|CAH92361.1| hypothetical protein [ ( 675) 1823 418.4 1.6e-114 gi|22208997|ref|NP_114091.2| Bardet-Biedl syndrome ( 721) 1819 417.6 3.2e-114 gi|15559555|gb|AAH14140.1| Bardet-Biedl syndrome 2 ( 721) 1819 417.6 3.2e-114 gi|158260231|dbj|BAF82293.1| unnamed protein produ ( 721) 1818 417.3 3.7e-114 gi|55729472|emb|CAH91467.1| hypothetical protein [ ( 721) 1817 417.1 4.3e-114 gi|119603269|gb|EAW82863.1| Bardet-Biedl syndrome ( 721) 1815 416.7 5.9e-114 gi|109128573|ref|XP_001091398.1| PREDICTED: Bardet ( 675) 1814 416.4 6.5e-114 gi|109128571|ref|XP_001091861.1| PREDICTED: Bardet ( 721) 1814 416.4 6.9e-114 gi|14042451|dbj|BAB55252.1| unnamed protein produc ( 721) 1798 412.8 8.3e-113 gi|73950367|ref|XP_535296.2| PREDICTED: similar to ( 834) 1783 409.5 9.7e-112 gi|149699130|ref|XP_001493033.1| PREDICTED: simila ( 721) 1755 403.2 6.8e-110 gi|20454829|sp|Q9CWF6|BBS2_MOUSE Bardet-Biedl synd ( 721) 1735 398.7 1.5e-108 gi|20454804|sp|Q99MH9|BBS2_RAT Bardet-Biedl syndro ( 721) 1730 397.6 3.3e-108 gi|81673858|gb|AAI09817.1| Bardet-Biedl syndrome 2 ( 721) 1721 395.5 1.4e-107 gi|126296160|ref|XP_001364898.1| PREDICTED: simila ( 721) 1717 394.6 2.5e-107 gi|149410247|ref|XP_001508479.1| PREDICTED: hypoth ( 754) 1692 389.0 1.3e-105 gi|76445901|gb|ABA42812.1| Bardet-Biedl Syndrome p ( 717) 1514 349.0 1.4e-93 gi|37748228|gb|AAH59423.1| Bbs2 protein [Danio rer ( 715) 1506 347.2 4.7e-93 gi|49904104|gb|AAH75745.1| Bardet-Biedl syndrome 2 ( 715) 1506 347.2 4.7e-93 gi|20454826|sp|Q98SP7|BBS2_BRARE Bardet-Biedl synd ( 715) 1506 347.2 4.7e-93 gi|53136594|emb|CAG32626.1| hypothetical protein [ ( 723) 1389 320.9 3.9e-85 gi|156218597|gb|EDO39492.1| predicted protein [Nem ( 701) 1339 309.7 9.2e-82 gi|115916101|ref|XP_001176955.1| PREDICTED: simila ( 716) 1326 306.8 7.1e-81 gi|190581773|gb|EDV21848.1| hypothetical protein T ( 718) 1260 291.9 2.1e-76 gi|91086107|ref|XP_967756.1| PREDICTED: similar to ( 716) 1014 236.7 9.1e-60 gi|193617803|ref|XP_001945111.1| PREDICTED: simila ( 692) 884 207.4 5.5e-51 gi|66546282|ref|XP_396279.2| PREDICTED: similar to ( 696) 794 187.2 6.8e-45 gi|156549494|ref|XP_001604585.1| PREDICTED: simila ( 699) 775 182.9 1.3e-43 gi|47208745|emb|CAG12369.1| unnamed protein produc ( 904) 703 166.8 1.2e-38 gi|108875135|gb|EAT39360.1| conserved hypothetical ( 741) 684 162.5 2e-37 gi|157013912|gb|EAA14125.4| AGAP009637-PA [Anophel ( 722) 677 160.9 5.7e-37 gi|167866943|gb|EDS30326.1| conserved hypothetical ( 728) 657 156.4 1.3e-35 gi|187025575|emb|CAP35240.1| C. briggsae CBR-BBS-2 ( 715) 652 155.3 2.8e-35 gi|158601340|gb|EDP38276.1| FG-GAP repeat family p ( 256) 635 151.2 1.7e-34 gi|89300650|gb|EAR98638.1| FG-GAP repeat family pr ( 681) 634 151.2 4.4e-34 gi|1072143|gb|AAA81672.1| Bbs (bardet-biedl syndro ( 699) 623 148.8 2.5e-33 gi|163778425|gb|EDQ92040.1| predicted protein [Mon ( 744) 424 104.1 7.7e-20 gi|70874700|gb|EAN88351.1| hypothetical protein, c ( 757) 382 94.6 5.4e-17 gi|124405820|emb|CAK71251.1| unnamed protein produ ( 663) 374 92.8 1.7e-16 gi|74830315|emb|CAI39046.1| BBS2, putative [Parame ( 667) 374 92.8 1.7e-16 gi|121890195|gb|EAX95581.1| hypothetical protein T ( 673) 333 83.6 1e-13 gi|62360422|gb|AAX80836.1| FG-GAP repeat protein, ( 736) 330 82.9 1.7e-13 gi|134071270|emb|CAM69955.1| hypothetical protein, ( 831) 328 82.5 2.6e-13 gi|68127719|emb|CAJ05952.1| hypothetical protein, ( 654) 325 81.8 3.4e-13 gi|90075694|dbj|BAE87527.1| unnamed protein produc ( 281) 315 79.3 8.2e-13 gi|134064025|emb|CAM40216.1| hypothetical protein, ( 655) 319 80.4 8.8e-13 gi|158282587|gb|EDP08339.1| predicted protein [Chl ( 133) 262 67.2 1.7e-09 >>gi|62087390|dbj|BAD92142.1| Bardet-Biedl syndrome 2 pr (321 aa) initn: 2135 init1: 2135 opt: 2135 Z-score: 2594.8 bits: 488.4 E(): 6.9e-136 Smith-Waterman score: 2135; 100.000% identity (100.000% similar) in 321 aa overlap (1-321:1-321) 10 20 30 40 50 60 ph0058 PRLHRAAAKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQVFIHNPHTRNQHVSASR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PRLHRAAAKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQVFIHNPHTRNQHVSASR 10 20 30 40 50 60 70 80 90 100 110 120 ph0058 VFQSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VFQSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREV 70 80 90 100 110 120 130 140 150 160 170 180 ph0058 ADGANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ADGANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGK 130 140 150 160 170 180 190 200 210 220 230 240 ph0058 KELLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KELLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYW 190 200 210 220 230 240 250 260 270 280 290 300 ph0058 RIKSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RIKSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGD 250 260 270 280 290 300 310 320 ph0058 YRMDGHIQLICCSVDGESKLG ::::::::::::::::::::: gi|620 YRMDGHIQLICCSVDGESKLG 310 320 >>gi|20454827|sp|Q9BXC9|BBS2_HUMAN Bardet-Biedl syndrome (721 aa) initn: 1824 init1: 1824 opt: 1825 Z-score: 2213.2 bits: 418.9 E(): 1.2e-114 Smith-Waterman score: 1825; 97.544% identity (98.246% similar) in 285 aa overlap (36-317:29-313) 10 20 30 40 50 60 ph0058 AAAKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQ---VFIHNPHTRNQHVSASRVF : :.:.: ::::::::::::::::::: gi|204 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVF 10 20 30 40 50 70 80 90 100 110 120 ph0058 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|204 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD 60 70 80 90 100 110 130 140 150 160 170 180 ph0058 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|204 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE 120 130 140 150 160 170 190 200 210 220 230 240 ph0058 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|204 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI 180 190 200 210 220 230 250 260 270 280 290 300 ph0058 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|204 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR 240 250 260 270 280 290 310 320 ph0058 MDGHIQLICCSVDGESKLG ::::::::::::::: gi|204 MDGHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEEN 300 310 320 330 340 350 >>gi|114662618|ref|XP_510980.2| PREDICTED: Bardet-Biedl (721 aa) initn: 1824 init1: 1824 opt: 1825 Z-score: 2213.2 bits: 418.9 E(): 1.2e-114 Smith-Waterman score: 1825; 97.544% identity (98.246% similar) in 285 aa overlap (36-317:29-313) 10 20 30 40 50 60 ph0058 AAAKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQ---VFIHNPHTRNQHVSASRVF : :.:.: ::::::::::::::::::: gi|114 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVF 10 20 30 40 50 70 80 90 100 110 120 ph0058 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD 60 70 80 90 100 110 130 140 150 160 170 180 ph0058 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE 120 130 140 150 160 170 190 200 210 220 230 240 ph0058 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI 180 190 200 210 220 230 250 260 270 280 290 300 ph0058 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR 240 250 260 270 280 290 310 320 ph0058 MDGHIQLICCSVDGESKLG ::::::::::::::: gi|114 MDGHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEEN 300 310 320 330 340 350 >>gi|55731294|emb|CAH92361.1| hypothetical protein [Pong (675 aa) initn: 1823 init1: 1823 opt: 1823 Z-score: 2211.2 bits: 418.4 E(): 1.6e-114 Smith-Waterman score: 1823; 97.500% identity (99.643% similar) in 280 aa overlap (38-317:34-313) 10 20 30 40 50 60 ph0058 AKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQVFIHNPHTRNQHVSASRVFQSPLE :. :..:::::::::::::::::::::::: gi|557 PVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQAGKVFIHNPHTRNQHVSASRVFQSPLE 10 20 30 40 50 60 70 80 90 100 110 120 ph0058 SDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGANAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGANAI 70 80 90 100 110 120 130 140 150 160 170 180 ph0058 VLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELLVGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELLVGS 130 140 150 160 170 180 190 200 210 220 230 240 ph0058 EDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKSKNH :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|557 EDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTARYWRIKSKNH 190 200 210 220 230 240 250 260 270 280 290 300 ph0058 AMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMDGHI :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::. gi|557 AMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAVAGVVEGDYRMDGHV 250 260 270 280 290 300 310 320 ph0058 QLICCSVDGESKLG :::::::::: gi|557 QLICCSVDGEIRGYLPGTAEMRGNLMDTSVEQDLIRELSQKKQNLLLELRNYEENAKAEL 310 320 330 340 350 360 >>gi|22208997|ref|NP_114091.2| Bardet-Biedl syndrome 2 p (721 aa) initn: 1818 init1: 1818 opt: 1819 Z-score: 2205.9 bits: 417.6 E(): 3.2e-114 Smith-Waterman score: 1819; 97.193% identity (98.246% similar) in 285 aa overlap (36-317:29-313) 10 20 30 40 50 60 ph0058 AAAKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQ---VFIHNPHTRNQHVSASRVF : :.:.: ::::::::::::::::::: gi|222 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVF 10 20 30 40 50 70 80 90 100 110 120 ph0058 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|222 QSPLESDVSLLSINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD 60 70 80 90 100 110 130 140 150 160 170 180 ph0058 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|222 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE 120 130 140 150 160 170 190 200 210 220 230 240 ph0058 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|222 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI 180 190 200 210 220 230 250 260 270 280 290 300 ph0058 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|222 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR 240 250 260 270 280 290 310 320 ph0058 MDGHIQLICCSVDGESKLG ::::::::::::::: gi|222 MDGHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEEN 300 310 320 330 340 350 >>gi|15559555|gb|AAH14140.1| Bardet-Biedl syndrome 2 [Ho (721 aa) initn: 1818 init1: 1818 opt: 1819 Z-score: 2205.9 bits: 417.6 E(): 3.2e-114 Smith-Waterman score: 1819; 96.842% identity (98.246% similar) in 285 aa overlap (36-317:29-313) 10 20 30 40 50 60 ph0058 AAAKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQ---VFIHNPHTRNQHVSASRVF : :.:.: ::::::::::::::::::: gi|155 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVF 10 20 30 40 50 70 80 90 100 110 120 ph0058 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|155 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD 60 70 80 90 100 110 130 140 150 160 170 180 ph0058 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE :::..::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|155 GANVVVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE 120 130 140 150 160 170 190 200 210 220 230 240 ph0058 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|155 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI 180 190 200 210 220 230 250 260 270 280 290 300 ph0058 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|155 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR 240 250 260 270 280 290 310 320 ph0058 MDGHIQLICCSVDGESKLG ::::::::::::::: gi|155 MDGHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEEN 300 310 320 330 340 350 >>gi|158260231|dbj|BAF82293.1| unnamed protein product [ (721 aa) initn: 1817 init1: 1817 opt: 1818 Z-score: 2204.7 bits: 417.3 E(): 3.7e-114 Smith-Waterman score: 1818; 97.193% identity (98.246% similar) in 285 aa overlap (36-317:29-313) 10 20 30 40 50 60 ph0058 AAAKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQ---VFIHNPHTRNQHVSASRVF : :.:.: ::::::::::::::::::: gi|158 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVF 10 20 30 40 50 70 80 90 100 110 120 ph0058 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD 60 70 80 90 100 110 130 140 150 160 170 180 ph0058 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE 120 130 140 150 160 170 190 200 210 220 230 240 ph0058 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|158 LLVGSEDFDIRVLKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI 180 190 200 210 220 230 250 260 270 280 290 300 ph0058 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR 240 250 260 270 280 290 310 320 ph0058 MDGHIQLICCSVDGESKLG ::::::::::::::: gi|158 MDGHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEEN 300 310 320 330 340 350 >>gi|55729472|emb|CAH91467.1| hypothetical protein [Pong (721 aa) initn: 1817 init1: 1817 opt: 1817 Z-score: 2203.5 bits: 417.1 E(): 4.3e-114 Smith-Waterman score: 1817; 97.143% identity (99.286% similar) in 280 aa overlap (38-317:34-313) 10 20 30 40 50 60 ph0058 AKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQVFIHNPHTRNQHVSASRVFQSPLE :. :..::::::::::::::: :::::::: gi|557 PVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQAGKVFIHNPHTRNQHVSAPRVFQSPLE 10 20 30 40 50 60 70 80 90 100 110 120 ph0058 SDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGANAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGANAI 70 80 90 100 110 120 130 140 150 160 170 180 ph0058 VLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELLVGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELLVGS 130 140 150 160 170 180 190 200 210 220 230 240 ph0058 EDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKSKNH :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|557 EDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTARYWRIKSKNH 190 200 210 220 230 240 250 260 270 280 290 300 ph0058 AMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMDGHI :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::. gi|557 AMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAVAGVVEGDYRMDGHV 250 260 270 280 290 300 310 320 ph0058 QLICCSVDGESKLG :::::::::: gi|557 QLICCSVDGEIRGYLPGTAEMRGNLMDTSVEQDLIRELSQKKQNLLLELRNYEENAKAEL 310 320 330 340 350 360 >>gi|119603269|gb|EAW82863.1| Bardet-Biedl syndrome 2, i (721 aa) initn: 1814 init1: 1814 opt: 1815 Z-score: 2201.0 bits: 416.7 E(): 5.9e-114 Smith-Waterman score: 1815; 96.842% identity (98.246% similar) in 285 aa overlap (36-317:29-313) 10 20 30 40 50 60 ph0058 AAAKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQ---VFIHNPHTRNQHVSASRVF : :.:.: ::::::::::::::::::: gi|119 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVF 10 20 30 40 50 70 80 90 100 110 120 ph0058 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::..: gi|119 QSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREATD 60 70 80 90 100 110 130 140 150 160 170 180 ph0058 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKE 120 130 140 150 160 170 190 200 210 220 230 240 ph0058 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRI 180 190 200 210 220 230 250 260 270 280 290 300 ph0058 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYR 240 250 260 270 280 290 310 320 ph0058 MDGHIQLICCSVDGESKLG ::::::::::::::: gi|119 MDGHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEEN 300 310 320 330 340 350 >>gi|109128573|ref|XP_001091398.1| PREDICTED: Bardet-Bie (675 aa) initn: 1814 init1: 1814 opt: 1814 Z-score: 2200.2 bits: 416.4 E(): 6.5e-114 Smith-Waterman score: 1814; 96.786% identity (99.286% similar) in 280 aa overlap (38-317:34-313) 10 20 30 40 50 60 ph0058 AKRADGSAPPQEEQAVPGRVRPGLFRVRPEAAGAAQVFIHNPHTRNQHVSASRVFQSPLE :. :..:::::::::::::::::::::::: gi|109 PVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQAGKVFIHNPHTRNQHVSASRVFQSPLE 10 20 30 40 50 60 70 80 90 100 110 120 ph0058 SDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGANAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|109 SDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGANAV 70 80 90 100 110 120 130 140 150 160 170 180 ph0058 VLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELLVGS :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|109 VLGTLGDISSPLAIIGGNCALQGFNHEGRDLFWTVTGDNVNSLALCDFDGDGKKELLVGS 130 140 150 160 170 180 190 200 210 220 230 240 ph0058 EDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKSKNH :::::::::::::::::::::.:::::::::::::::::::::::::::.:::::::::: gi|109 EDFDIRVFKEDEIVAEMTETEVVTSLCPMYGSRFGYALSNGTVGVYDKTARYWRIKSKNH 190 200 210 220 230 240 250 260 270 280 290 300 ph0058 AMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMDGHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|109 AMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMDGHM 250 260 270 280 290 300 310 320 ph0058 QLICCSVDGESKLG :::::::::: gi|109 QLICCSVDGEIRGYLPGTAEMKGNLMDTSVEQDLIRELSQKKQNLLLELRNYEENAKAEL 310 320 330 340 350 360 321 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 11:42:41 2008 done: Wed Aug 13 11:45:18 2008 Total Scan time: 765.120 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]