hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-11511595/chunk_1/iprscan-20080813-11511595.nocrc
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Query sequence: ph00591
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00817.11.fs impB/mucB/samB family                          135.9    9.2e-38   1
PF00817.11.ls impB/mucB/samB family                           12.7    2.4e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00817.11.fs   1/1       1   247 [.   102   389 ..   135.9  9.2e-38
PF00817.11.ls   1/1       1   315 [.     1   450 []    12.7  2.4e-10

Alignments of top-scoring domains:
PF00817.11.fs: domain 1 of 1, from 1 to 247: score 135.9, E = 9.2e-38
                   *->lYakaSreirkimaileelvyaplVevySIDEaFlDllsdltdives
                      +Y+++S ++   +++lee  ++p+Ve++ +DE F+D    lt++ve+
     ph00591     1    RYREMSYKV---TELLEE--FSPVVERLGFDENFVD----LTEMVEK 38   

                   nlklkiseelrealplk.vllnsnkkdl..ie.evvkrekefedpdefav
                                       l s + +  +  + v +++ +   +d +  
     ph00591    39 ----------------RlQQLQSDELSAvtVSgHVYNNQSIN-LLDVLHI 71   

                   lLelgekivkeIRkrileetgltvSvGIapnKlLAKLAsdaaKPngatgg
                   +L  g++i+ e R+ +++++glt ++G+a+nKlLAKL+s+  KPn+    
     ph00591    72 RLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQ---- 117  

                   vviltndeaevqkllsll.PvtevwGiGrkrlekkLnkLGdIdTigDLak
                   +++l   +   q l  +l+ ++e++GiG+ +++k L++LG I++++DL+ 
     ph00591   118 QTVLL--PESCQHLIHSLnHIKEIPGIGY-KTAKCLEALG-INSVRDLQ- 162  

                   hadlrlLkklfGvngaerllrlarGidcteleekavlRKsvpkkksigvs
                    ++++ L+k +G+  a+r+ +l+ G+d++++           + +s++ +
     ph00591   163 TFSPKILEKELGISVAQRIQKLSFGEDNSPVILSG-------PPQSFSEE 205  

                   rtfprdvtdkeeeikqalleelaerlaerLrkegkvmartisvfik<-*
                    +f + ++  e   k+++  el ++l +r+ ++g+  + t+++ i+   
     ph00591   206 DSFKKCSSEVE--AKNKIE-ELLASLLNRVCQDGRK-PHTVRLIIR    247  

PF00817.11.ls: domain 1 of 1, from 1 to 315: score 12.7, E = 2.4e-10
                   *->vDmDsFYASVEeverGLnPdLkgkPvvVgssensdGvVlaasnYeAR
                                    r                                
     ph00591     1    --------------R-------------------------------- 1    

                   kyGvkngmpvfeAkfvnrkfnyavgkkEpwqYvklcprwvlaavklivlp
                                                                     
     ph00591     - -------------------------------------------------- -    

                   snfalYakaSreirkimaileelvyaplVevySIDEaFlDllsdltdive
                        Y+++S ++   +++lee  ++p+Ve++ +DE F+D    lt++ve
     ph00591     2 -----YREMSYKV---TELLEE--FSPVVERLGFDENFVD----LTEMVE 37   

                   snlklkiseelrealplk.vllnsnkkdl..ie.evvkrekefedpdefa
                   +                    l s + +  +  + v +++ +   +d + 
     ph00591    38 K----------------RlQQLQSDELSAvtVSgHVYNNQSIN-LLDVLH 70   

                   vlLelgekivkeIRkrileetgltvSvGIapnKlLAKLAsdaaKPngatg
                    +L  g++i+ e R+ +++++glt ++G+a+nKlLAKL+s+  KPn+   
     ph00591    71 IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQ--- 117  

                   gvviltndeaevqkllsll.PvtevwGiGrkrlekkLnkLGdIdTigDLa
                    +++l   +   q l  +l+ ++e++GiG+ +++k L++LG I++++DL+
     ph00591   118 -QTVLL--PESCQHLIHSLnHIKEIPGIGY-KTAKCLEALG-INSVRDLQ 162  

                   khadlrlLkklfGvngaerllrlarGidcteleekavlRKsvpkkksigv
                     ++++ L+k +G+  a+r+ +l+ G+d++++           + +s++ 
     ph00591   163 -TFSPKILEKELGISVAQRIQKLSFGEDNSPVILSG-------PPQSFSE 204  

                   srtfprdvtdkeeeikqalleelaerlaerLrkegkvmartisvfiktsd
                   + +f + ++  e   k+++  el ++l +r+ ++g+  + t+++ i+  +
     ph00591   205 EDSFKKCSSEVE--AKNKIE-ELLASLLNRVCQDGRK-PHTVRLIIRRYS 250  

                   fdvsescqygntrsrklgiPtqdtrdl...........teaalrllllli
                    +      y    sr+ +iP++  ++l++++ +  ++  +++++ l++++
     ph00591   251 SEK----HY-GRESRQCPIPSHVIQKLgtgnydvmtpmVDILMK-LFRNM 294  

                   wrggrr..vRllGVslsdLid<-*
                      +++ ++ ll+V + +L+    
     ph00591   295 VNVKMPfhLTLLSVCFCNLKA    315  

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