# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oph00591.fasta.nr -Q ph00591.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ph00591, 615 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6841178 sequences Expectation_n fit: rho(ln(x))= 5.5035+/-0.000187; mu= 10.4638+/- 0.010 mean_var=77.5235+/-15.038, 0's: 32 Z-trim: 44 B-trim: 0 in 0/66 Lambda= 0.145666 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|21619716|gb|AAH32662.1| Polymerase (DNA directe ( 715) 4056 862.2 0 gi|154350220|ref|NP_009126.2| polymerase (DNA dire ( 740) 4056 862.2 0 gi|148753372|gb|AAI42675.1| POLI protein [Homo sap ( 705) 4051 861.1 0 gi|59798440|sp|Q9UNA4.1|POLI_HUMAN DNA polymerase ( 715) 4051 861.1 0 gi|119583404|gb|EAW63000.1| polymerase (DNA direct ( 739) 4051 861.1 0 gi|7533183|gb|AAF63383.1|AF245438_1 DNA polymerase ( 715) 4037 858.2 0 gi|12052864|emb|CAB66605.1| hypothetical protein [ ( 715) 4037 858.2 0 gi|114673197|ref|XP_001156586.1| PREDICTED: polyme ( 637) 3997 849.7 0 gi|114673195|ref|XP_001156692.1| PREDICTED: polyme ( 672) 3997 849.7 0 gi|114673193|ref|XP_001156755.1| PREDICTED: polyme ( 739) 3997 849.8 0 gi|67971498|dbj|BAE02091.1| unnamed protein produc ( 637) 3877 824.5 0 gi|194214689|ref|XP_001499840.2| PREDICTED: simila ( 864) 3463 737.6 3.3e-210 gi|66393909|gb|AAY46031.1| DNA polymerase iota [Bo ( 747) 3419 728.3 1.8e-207 gi|126320771|ref|XP_001362838.1| PREDICTED: simila ( 780) 3260 694.9 2.1e-197 gi|148744927|gb|AAI42235.1| POLI protein [Bos taur ( 701) 3214 685.2 1.6e-194 gi|149064585|gb|EDM14788.1| polymerase (DNA direct ( 669) 3172 676.4 7e-192 gi|149064586|gb|EDM14789.1| polymerase (DNA direct ( 732) 3172 676.4 7.5e-192 gi|51895887|gb|AAH82278.1| Poli protein [Mus muscu ( 674) 3060 652.8 8.6e-185 gi|148677620|gb|EDL09567.1| polymerase (DNA direct ( 679) 3060 652.8 8.6e-185 gi|5739300|gb|AAD50424.1|AF151691_1 DNA polymerase ( 717) 3059 652.6 1e-184 gi|59798311|sp|Q6R3M4|POLI_MOUSE DNA polymerase io ( 717) 3053 651.4 2.5e-184 gi|74208215|dbj|BAE26322.1| unnamed protein produc ( 717) 3052 651.2 2.9e-184 gi|45738076|gb|AAS75835.1| DNA polymerase iota [Mu ( 717) 3052 651.2 2.9e-184 gi|148677622|gb|EDL09569.1| polymerase (DNA direct ( 661) 2861 611.0 3.3e-172 gi|149409778|ref|XP_001509638.1| PREDICTED: simila ( 698) 2754 588.5 2e-165 gi|149064584|gb|EDM14787.1| polymerase (DNA direct ( 530) 2733 584.0 3.4e-164 gi|148677621|gb|EDL09568.1| polymerase (DNA direct ( 549) 2692 575.4 1.4e-161 gi|74181926|dbj|BAE32662.1| unnamed protein produc ( 549) 2685 574.0 3.8e-161 gi|110591264|pdb|2DPI|A Chain A, Ternary Complex O ( 420) 2075 445.7 1.2e-122 gi|51247537|pdb|1T3N|A Chain A, Structure Of The C ( 388) 2042 438.7 1.4e-120 gi|82407825|pdb|2ALZ|A Chain A, Ternary Complex Of ( 390) 2042 438.7 1.4e-120 gi|119583405|gb|EAW63001.1| polymerase (DNA direct ( 429) 1775 382.7 1.2e-103 gi|113197613|gb|AAI21200.1| DNA polymerase iota [X ( 742) 1333 289.9 1.7e-75 gi|70955242|gb|AAZ16247.1| DNA polymerase iota [Xe ( 742) 1323 287.8 7.1e-75 gi|148677624|gb|EDL09571.1| polymerase (DNA direct ( 278) 1194 260.4 4.7e-67 gi|123233060|emb|CAM16276.1| novel protein similar ( 710) 1182 258.2 5.7e-66 gi|62202162|gb|AAH92781.1| Zgc:110185 [Danio rerio ( 710) 1179 257.5 8.8e-66 gi|26355807|dbj|BAC25154.1| unnamed protein produc ( 254) 1008 221.3 2.5e-55 gi|74202822|dbj|BAE37492.1| unnamed protein produc ( 267) 941 207.2 4.6e-51 gi|115738160|ref|XP_785451.2| PREDICTED: hypotheti ( 642) 859 190.3 1.4e-45 gi|91086917|ref|XP_971585.1| PREDICTED: similar to ( 537) 782 174.0 9.2e-41 gi|110756459|ref|XP_623617.2| PREDICTED: similar t ( 540) 771 171.7 4.6e-40 gi|190587611|gb|EDV27653.1| hypothetical protein T ( 386) 716 160.1 1.1e-36 gi|194170026|gb|EDW84927.1| GK14382 [Drosophila wi ( 735) 701 157.1 1.6e-35 gi|156217999|gb|EDO38905.1| predicted protein [Nem ( 403) 673 151.0 5.8e-34 gi|194121028|gb|EDW43071.1| GM23708 [Drosophila se ( 735) 665 149.5 3e-33 gi|190628634|gb|EDV44158.1| GF18848 [Drosophila an ( 732) 664 149.3 3.4e-33 gi|194182869|gb|EDW96480.1| GE25854 [Drosophila ya ( 737) 662 148.9 4.6e-33 gi|194200225|gb|EDX13801.1| GD18521 [Drosophila si ( 712) 661 148.7 5.2e-33 gi|157017726|gb|EAA08441.4| AGAP003157-PA [Anophel ( 696) 658 148.1 7.9e-33 >>gi|21619716|gb|AAH32662.1| Polymerase (DNA directed) i (715 aa) initn: 4056 init1: 4056 opt: 4056 Z-score: 4603.6 bits: 862.2 E(): 0 Smith-Waterman score: 4056; 100.000% identity (100.000% similar) in 615 aa overlap (1-615:101-715) 10 20 30 ph0059 RYREMSYKVTELLEEFSPVVERLGFDENFV :::::::::::::::::::::::::::::: gi|216 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 80 90 100 110 120 130 40 50 60 70 80 90 ph0059 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ 140 150 160 170 180 190 100 110 120 130 140 150 ph0059 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL 200 210 220 230 240 250 160 170 180 190 200 210 ph0059 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK 260 270 280 290 300 310 220 230 240 250 260 270 ph0059 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ 320 330 340 350 360 370 280 290 300 310 320 330 ph0059 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP 380 390 400 410 420 430 340 350 360 370 380 390 ph0059 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI 440 450 460 470 480 490 400 410 420 430 440 450 ph0059 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK 500 510 520 530 540 550 460 470 480 490 500 510 ph0059 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS 560 570 580 590 600 610 520 530 540 550 560 570 ph0059 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP 620 630 640 650 660 670 580 590 600 610 ph0059 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK ::::::::::::::::::::::::::::::::::::::::::::: gi|216 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK 680 690 700 710 >>gi|154350220|ref|NP_009126.2| polymerase (DNA directed (740 aa) initn: 4056 init1: 4056 opt: 4056 Z-score: 4603.4 bits: 862.2 E(): 0 Smith-Waterman score: 4056; 100.000% identity (100.000% similar) in 615 aa overlap (1-615:126-740) 10 20 30 ph0059 RYREMSYKVTELLEEFSPVVERLGFDENFV :::::::::::::::::::::::::::::: gi|154 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 100 110 120 130 140 150 40 50 60 70 80 90 ph0059 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|154 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ 160 170 180 190 200 210 100 110 120 130 140 150 ph0059 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|154 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL 220 230 240 250 260 270 160 170 180 190 200 210 ph0059 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|154 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK 280 290 300 310 320 330 220 230 240 250 260 270 ph0059 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|154 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ 340 350 360 370 380 390 280 290 300 310 320 330 ph0059 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|154 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP 400 410 420 430 440 450 340 350 360 370 380 390 ph0059 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|154 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI 460 470 480 490 500 510 400 410 420 430 440 450 ph0059 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|154 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK 520 530 540 550 560 570 460 470 480 490 500 510 ph0059 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|154 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS 580 590 600 610 620 630 520 530 540 550 560 570 ph0059 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|154 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP 640 650 660 670 680 690 580 590 600 610 ph0059 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK ::::::::::::::::::::::::::::::::::::::::::::: gi|154 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK 700 710 720 730 740 >>gi|148753372|gb|AAI42675.1| POLI protein [Homo sapiens (705 aa) initn: 4051 init1: 4051 opt: 4051 Z-score: 4598.1 bits: 861.1 E(): 0 Smith-Waterman score: 4051; 99.837% identity (100.000% similar) in 615 aa overlap (1-615:91-705) 10 20 30 ph0059 RYREMSYKVTELLEEFSPVVERLGFDENFV :::::::::::::::::::::::::::::: gi|148 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 70 80 90 100 110 120 40 50 60 70 80 90 ph0059 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ 130 140 150 160 170 180 100 110 120 130 140 150 ph0059 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL 190 200 210 220 230 240 160 170 180 190 200 210 ph0059 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK 250 260 270 280 290 300 220 230 240 250 260 270 ph0059 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ 310 320 330 340 350 360 280 290 300 310 320 330 ph0059 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP 370 380 390 400 410 420 340 350 360 370 380 390 ph0059 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI 430 440 450 460 470 480 400 410 420 430 440 450 ph0059 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK 490 500 510 520 530 540 460 470 480 490 500 510 ph0059 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS 550 560 570 580 590 600 520 530 540 550 560 570 ph0059 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP 610 620 630 640 650 660 580 590 600 610 ph0059 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK :::::::::::::::::::::::::::::::::::.::::::::: gi|148 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRTGSDFHIGHK 670 680 690 700 >>gi|59798440|sp|Q9UNA4.1|POLI_HUMAN DNA polymerase iota (715 aa) initn: 4051 init1: 4051 opt: 4051 Z-score: 4598.0 bits: 861.1 E(): 0 Smith-Waterman score: 4051; 99.837% identity (100.000% similar) in 615 aa overlap (1-615:101-715) 10 20 30 ph0059 RYREMSYKVTELLEEFSPVVERLGFDENFV :::::::::::::::::::::::::::::: gi|597 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 80 90 100 110 120 130 40 50 60 70 80 90 ph0059 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ 140 150 160 170 180 190 100 110 120 130 140 150 ph0059 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL 200 210 220 230 240 250 160 170 180 190 200 210 ph0059 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK 260 270 280 290 300 310 220 230 240 250 260 270 ph0059 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ 320 330 340 350 360 370 280 290 300 310 320 330 ph0059 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP 380 390 400 410 420 430 340 350 360 370 380 390 ph0059 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI 440 450 460 470 480 490 400 410 420 430 440 450 ph0059 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK 500 510 520 530 540 550 460 470 480 490 500 510 ph0059 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS 560 570 580 590 600 610 520 530 540 550 560 570 ph0059 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP 620 630 640 650 660 670 580 590 600 610 ph0059 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK :::::::::::::::::::::::::::::::::::.::::::::: gi|597 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRTGSDFHIGHK 680 690 700 710 >>gi|119583404|gb|EAW63000.1| polymerase (DNA directed) (739 aa) initn: 4051 init1: 4051 opt: 4051 Z-score: 4597.8 bits: 861.1 E(): 0 Smith-Waterman score: 4051; 99.837% identity (100.000% similar) in 615 aa overlap (1-615:125-739) 10 20 30 ph0059 RYREMSYKVTELLEEFSPVVERLGFDENFV :::::::::::::::::::::::::::::: gi|119 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 100 110 120 130 140 150 40 50 60 70 80 90 ph0059 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ 160 170 180 190 200 210 100 110 120 130 140 150 ph0059 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL 220 230 240 250 260 270 160 170 180 190 200 210 ph0059 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK 280 290 300 310 320 330 220 230 240 250 260 270 ph0059 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ 340 350 360 370 380 390 280 290 300 310 320 330 ph0059 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP 400 410 420 430 440 450 340 350 360 370 380 390 ph0059 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI 460 470 480 490 500 510 400 410 420 430 440 450 ph0059 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK 520 530 540 550 560 570 460 470 480 490 500 510 ph0059 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS 580 590 600 610 620 630 520 530 540 550 560 570 ph0059 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP 640 650 660 670 680 690 580 590 600 610 ph0059 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK :::::::::::::::::::::::::::::::::::.::::::::: gi|119 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRTGSDFHIGHK 700 710 720 730 >>gi|7533183|gb|AAF63383.1|AF245438_1 DNA polymerase iot (715 aa) initn: 4037 init1: 4037 opt: 4037 Z-score: 4582.1 bits: 858.2 E(): 0 Smith-Waterman score: 4037; 99.512% identity (99.837% similar) in 615 aa overlap (1-615:101-715) 10 20 30 ph0059 RYREMSYKVTELLEEFSPVVERLGFDENFV :::::::::::::::::::::::::::::: gi|753 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 80 90 100 110 120 130 40 50 60 70 80 90 ph0059 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|753 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ 140 150 160 170 180 190 100 110 120 130 140 150 ph0059 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|753 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL 200 210 220 230 240 250 160 170 180 190 200 210 ph0059 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|753 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK 260 270 280 290 300 310 220 230 240 250 260 270 ph0059 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|753 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ 320 330 340 350 360 370 280 290 300 310 320 330 ph0059 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|753 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSACFCNLKALNTAKKGLIDYYLMP 380 390 400 410 420 430 340 350 360 370 380 390 ph0059 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|753 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKGI 440 450 460 470 480 490 400 410 420 430 440 450 ph0059 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|753 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK 500 510 520 530 540 550 460 470 480 490 500 510 ph0059 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|753 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS 560 570 580 590 600 610 520 530 540 550 560 570 ph0059 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|753 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP 620 630 640 650 660 670 580 590 600 610 ph0059 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK :::::::::::::::::::::::::::::::::::.::::::::: gi|753 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRTGSDFHIGHK 680 690 700 710 >>gi|12052864|emb|CAB66605.1| hypothetical protein [Homo (715 aa) initn: 4037 init1: 4037 opt: 4037 Z-score: 4582.1 bits: 858.2 E(): 0 Smith-Waterman score: 4037; 99.512% identity (99.837% similar) in 615 aa overlap (1-615:101-715) 10 20 30 ph0059 RYREMSYKVTELLEEFSPVVERLGFDENFV :::::::::::::::::::::::::::::: gi|120 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 80 90 100 110 120 130 40 50 60 70 80 90 ph0059 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ 140 150 160 170 180 190 100 110 120 130 140 150 ph0059 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL 200 210 220 230 240 250 160 170 180 190 200 210 ph0059 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK 260 270 280 290 300 310 220 230 240 250 260 270 ph0059 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 CTSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ 320 330 340 350 360 370 280 290 300 310 320 330 ph0059 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP 380 390 400 410 420 430 340 350 360 370 380 390 ph0059 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI 440 450 460 470 480 490 400 410 420 430 440 450 ph0059 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|120 NEFPLCSLPEGVDQEVSKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK 500 510 520 530 540 550 460 470 480 490 500 510 ph0059 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS 560 570 580 590 600 610 520 530 540 550 560 570 ph0059 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP 620 630 640 650 660 670 580 590 600 610 ph0059 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK :::::::::::::::::::::::::::::::::::.::::::::: gi|120 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRTGSDFHIGHK 680 690 700 710 >>gi|114673197|ref|XP_001156586.1| PREDICTED: polymerase (637 aa) initn: 3997 init1: 3997 opt: 3997 Z-score: 4537.4 bits: 849.7 E(): 0 Smith-Waterman score: 3997; 98.374% identity (99.350% similar) in 615 aa overlap (1-615:23-637) 10 20 30 ph0059 RYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEK :::::::::::::::::::::::::::::::::::: : gi|114 MNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVGK 10 20 30 40 50 60 40 50 60 70 80 90 ph0059 RLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAG :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RLQQLQSDELSVVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAG 70 80 90 100 110 120 100 110 120 130 140 150 ph0059 VASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLEALGINSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLEALGINSV 130 140 150 160 170 180 160 170 180 190 200 210 ph0059 RDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAK :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|114 RDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVIPSGPPQSFSEEDSFKKCSSEVEAK 190 200 210 220 230 240 220 230 240 250 260 270 ph0059 NKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYD 250 260 270 280 290 300 280 290 300 310 320 330 ph0059 VMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMPSLSTTSRS :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|114 VMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLTPSLSTTSRS 310 320 330 340 350 360 340 350 360 370 380 390 ph0059 GKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDINEFPLCSL :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GKHSFKMKDSHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDINEFPLCSL 370 380 390 400 410 420 400 410 420 430 440 450 ph0059 PEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKKQMQDIPIN ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|114 PEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSMSCPLHASRGVLSFFSKKQMQDIPIN 430 440 450 460 470 480 460 470 480 490 500 510 ph0059 PRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERISQGPKEPQG ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|114 PRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERMSQGPKEPQG 490 500 510 520 530 540 520 530 540 550 560 570 ph0059 FHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREPDSVDEKIT ::::::::::::::::::: ::::::.::::::::::::::::::::::::::::::::: gi|114 FHFTNSNPAVSAFHSFPNLLSEQLFSKNHTTDSHKQTVATDSHEGLTENREPDSVDEKIT 550 560 570 580 590 600 580 590 600 610 ph0059 FPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK :::::::::::::::::::::::::::.::::::::: gi|114 FPSDIDPQVFYELPEAVQKELLAEWKRTGSDFHIGHK 610 620 630 >>gi|114673195|ref|XP_001156692.1| PREDICTED: polymerase (672 aa) initn: 3997 init1: 3997 opt: 3997 Z-score: 4537.0 bits: 849.7 E(): 0 Smith-Waterman score: 3997; 98.374% identity (99.350% similar) in 615 aa overlap (1-615:58-672) 10 20 30 ph0059 RYREMSYKVTELLEEFSPVVERLGFDENFV :::::::::::::::::::::::::::::: gi|114 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 30 40 50 60 70 80 40 50 60 70 80 90 ph0059 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ :::::: ::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|114 DLTEMVGKRLQQLQSDELSVVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ 90 100 110 120 130 140 100 110 120 130 140 150 ph0059 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL 150 160 170 180 190 200 160 170 180 190 200 210 ph0059 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|114 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVIPSGPPQSFSEEDSFKK 210 220 230 240 250 260 220 230 240 250 260 270 ph0059 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ 270 280 290 300 310 320 280 290 300 310 320 330 ph0059 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|114 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLTP 330 340 350 360 370 380 340 350 360 370 380 390 ph0059 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|114 SLSTTSRSGKHSFKMKDSHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI 390 400 410 420 430 440 400 410 420 430 440 450 ph0059 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: gi|114 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSMSCPLHASRGVLSFFSKK 450 460 470 480 490 500 460 470 480 490 500 510 ph0059 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|114 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERMS 510 520 530 540 550 560 520 530 540 550 560 570 ph0059 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP ::::::::::::::::::::::::::: ::::::.::::::::::::::::::::::::: gi|114 QGPKEPQGFHFTNSNPAVSAFHSFPNLLSEQLFSKNHTTDSHKQTVATDSHEGLTENREP 570 580 590 600 610 620 580 590 600 610 ph0059 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK :::::::::::::::::::::::::::::::::::.::::::::: gi|114 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRTGSDFHIGHK 630 640 650 660 670 >>gi|114673193|ref|XP_001156755.1| PREDICTED: polymerase (739 aa) initn: 3997 init1: 3997 opt: 3997 Z-score: 4536.4 bits: 849.8 E(): 0 Smith-Waterman score: 3997; 98.374% identity (99.350% similar) in 615 aa overlap (1-615:125-739) 10 20 30 ph0059 RYREMSYKVTELLEEFSPVVERLGFDENFV :::::::::::::::::::::::::::::: gi|114 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 100 110 120 130 140 150 40 50 60 70 80 90 ph0059 DLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ :::::: ::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|114 DLTEMVGKRLQQLQSDELSVVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQ 160 170 180 190 200 210 100 110 120 130 140 150 ph0059 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCL 220 230 240 250 260 270 160 170 180 190 200 210 ph0059 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKK :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|114 EALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVIPSGPPQSFSEEDSFKK 280 290 300 310 320 330 220 230 240 250 260 270 ph0059 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 CSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQ 340 350 360 370 380 390 280 290 300 310 320 330 ph0059 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|114 KLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLTP 400 410 420 430 440 450 340 350 360 370 380 390 ph0059 SLSTTSRSGKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|114 SLSTTSRSGKHSFKMKDSHMEDFPKDKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDI 460 470 480 490 500 510 400 410 420 430 440 450 ph0059 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKK ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: gi|114 NEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSMSCPLHASRGVLSFFSKK 520 530 540 550 560 570 460 470 480 490 500 510 ph0059 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERIS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|114 QMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERMS 580 590 600 610 620 630 520 530 540 550 560 570 ph0059 QGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREP ::::::::::::::::::::::::::: ::::::.::::::::::::::::::::::::: gi|114 QGPKEPQGFHFTNSNPAVSAFHSFPNLLSEQLFSKNHTTDSHKQTVATDSHEGLTENREP 640 650 660 670 680 690 580 590 600 610 ph0059 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK :::::::::::::::::::::::::::::::::::.::::::::: gi|114 DSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRTGSDFHIGHK 700 710 720 730 615 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 11:49:07 2008 done: Wed Aug 13 11:51:14 2008 Total Scan time: 930.160 Total Display time: 0.250 Function used was FASTA [version 34.26.5 April 26, 2007]