hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-12155691/chunk_1/iprscan-20080813-12155691.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ph01059 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06375.2.fs Bovine leukaemia virus receptor (BLVR) 1183.3 0 2 PF06375.2.ls Bovine leukaemia virus receptor (BLVR) 1093.0 0 1 PF01602.10.ls Adaptin N terminal region 693.6 1.3e-205 1 PF01602.10.fs Adaptin N terminal region 691.6 5.4e-205 1 PF02985.12.ls HEAT repeat 44.0 4.6e-10 5 PF02985.12.fs HEAT repeat 37.7 1.4e-09 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01602.10.fs 1/1 101 652 .. 1 630 [] 691.6 5.4e-205 PF01602.10.ls 1/1 101 652 .. 1 630 [] 693.6 1.3e-205 PF02985.12.ls 2/5 248 283 .. 1 36 [] 18.8 0.018 PF02985.12.ls 5/5 408 440 .. 1 36 [] 12.8 1.1 PF06375.2.fs 1/2 713 972 .. 1 252 [. 562.5 4e-166 PF06375.2.ls 1/1 713 1282 .. 1 644 [] 1093.0 0 PF06375.2.fs 2/2 1036 1280 .. 316 560 .. 620.9 1e-183 Alignments of top-scoring domains: PF01602.10.fs: domain 1 of 1, from 101 to 652: score 691.6, E = 5.4e-205 *->ekkeitqelaeilnsfkddKkLdpykkkdavkKliylimlGnedisf e+k+i+q++ ei++++k+d ++ +k++av+Kl+yl+mlG +dis+ ph01059 101 EAKYISQCIDEIKQELKQD---NIAVKANAVCKLTYLQMLG-YDISW 143 lfaevvklvaskkdfelKrlgLRrmVYLylkllaeespDGklhlaiLatn + ++++++++ +k f+ Kr+g YL+++++++e +D +++L+tn ph01059 144 AAFNIIEVMSASK-FTFKRIG-----YLAASQSFHEGTD----VIMLTTN 183 tikkDLqspNplirglALrtLssirvpelardlapdikkllvdespnpyV +i+kDL+sp ++ g+AL++Ls++ +p+lardla+di++l+++ ++py+ ph01059 184 QIRKDLSSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSH--TKPYI 231 RKkAalailkLyrkdpelvernglvedlkelLslDsnpgVvsaAVaalde RKkA+l ++k+++k+pe +++ +++lke+L+ D++pgV+saAV++++e ph01059 232 RKKAVLIMYKVFLKYPESLRP--AFPRLKEKLE-DPDPGVQSAAVNVICE 278 ickqnpdllllfrDlklvplLvrfvrllrklltalsdlnewggnsvpqpf ++++np+++l ++ +l++kl+t+ + n+w ph01059 279 LARRNPKNYLSLA------------PLFFKLMTS--STNNW--------- 305 llvkLiklLrlylrkdlvepdprlGlngkdlserltfilqlvntkvelsk +l+k+i + +++ +l++ +prl gk+l+e+lt+++++++++++l+ ph01059 306 VLIKII---K-LFG-ALTPLEPRL---GKKLIEPLTNLIHSTSAMSLLY- 346 vqhknvsnavlfelaltisdldsapelivlainkLlvlLlssdpnlrYva ++ n+v+++l++++s++++++++i+l+++kL +l+++sd+nl+Y++ ph01059 347 ----ECVNTVIAVLISLSSGMPNHSASIQLCVQKLRILIEDSDQNLKYLG 392 LrnlnkivmsekrpskeeglekavqrhrlkiffclstdddisIrlraLdl L +++ki++ ++p+ vq+h++ i+ cl+ d+d+sIrlraLdl ph01059 393 LLAMSKILK--THPK-------SVQSHKDLILQCLD-DKDESIRLRALDL 432 LykLvdesNvkeivkeLkeyveeadndehedtfvkiavvaiirlacekdn Ly++v+++N++eivk+L+++v++a++ +++++ ++i+ +c+++n ph01059 433 LYGMVSKKNLMEIVKKLMTHVDKAEGT-----TYRDELLTKIIDICSQSN 477 YqfptdaewcidvLleLLkltagsyvvaeaivvqiidiirkyPelreyaV Yq++t++ew+i++L+eL + +++++++ i++q+ d+ +++ ++r++aV ph01059 478 YQYITNFEWYISILVELTR--LEGTRHGHLIAAQMLDVAIRVKAIRKFAV 525 sqiitlL..aallesies...mpearaaaiWilGEygelipdiapceese sq+ +lL++a+ll+s +++++++e+++aa+Wi+GE++e++++ + ph01059 526 SQMSALLdsAHLLASSTQrngICEVLYAAAWICGEFSEHLQEP-H----- 569 psevesdidllreiae.nfslenlevraqlLtalvKLgltkpdikqQ... + l+ ++ +++++ + +++a+ ++ +vKL+ +i qQ+++ ph01059 570 --------HTLEAMLRpRVTTLPGHIQAVYVQNVVKLY---ASILQQkeq 608 ...ee.iqpveeliqsvlslalnssdnelElRDRAreylrllslad<-* +++e++q+v++l+ ++l ++ +s+d lE+++RA ++l+l+++ + ph01059 609 ageAEgAQAVTQLMVDRLPQFVQSAD--LEVQERASCILQLVKHIQ 652 PF01602.10.ls: domain 1 of 1, from 101 to 652: score 693.6, E = 1.3e-205 *->ekkeitqelaeilnsfkddKkLdpykkkdavkKliylimlGnedisf e+k+i+q++ ei++++k+d ++ +k++av+Kl+yl+mlG +dis+ ph01059 101 EAKYISQCIDEIKQELKQD---NIAVKANAVCKLTYLQMLG-YDISW 143 lfaevvklvaskkdfelKrlgLRrmVYLylkllaeespDGklhlaiLatn + ++++++++ +k f+ Kr+g YL+++++++e +D +++L+tn ph01059 144 AAFNIIEVMSASK-FTFKRIG-----YLAASQSFHEGTD----VIMLTTN 183 tikkDLqspNplirglALrtLssirvpelardlapdikkllvdespnpyV +i+kDL+sp ++ g+AL++Ls++ +p+lardla+di++l+++ ++py+ ph01059 184 QIRKDLSSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSH--TKPYI 231 RKkAalailkLyrkdpelvernglvedlkelLslDsnpgVvsaAVaalde RKkA+l ++k+++k+pe +++ +++lke+L+ D++pgV+saAV++++e ph01059 232 RKKAVLIMYKVFLKYPESLRP--AFPRLKEKLE-DPDPGVQSAAVNVICE 278 ickqnpdllllfrDlklvplLvrfvrllrklltalsdlnewggnsvpqpf ++++np+++l ++ +l++kl+t+ + n+w ph01059 279 LARRNPKNYLSLA------------PLFFKLMTS--STNNW--------- 305 llvkLiklLrlylrkdlvepdprlGlngkdlserltfilqlvntkvelsk +l+k+i + +++ +l++ +prl gk+l+e+lt+++++++++++l+ ph01059 306 VLIKII---K-LFG-ALTPLEPRL---GKKLIEPLTNLIHSTSAMSLLY- 346 vqhknvsnavlfelaltisdldsapelivlainkLlvlLlssdpnlrYva ++ n+v+++l++++s++++++++i+l+++kL +l+++sd+nl+Y++ ph01059 347 ----ECVNTVIAVLISLSSGMPNHSASIQLCVQKLRILIEDSDQNLKYLG 392 LrnlnkivmsekrpskeeglekavqrhrlkiffclstdddisIrlraLdl L +++ki++ ++p+ vq+h++ i+ cl+ d+d+sIrlraLdl ph01059 393 LLAMSKILK--THPK-------SVQSHKDLILQCLD-DKDESIRLRALDL 432 LykLvdesNvkeivkeLkeyveeadndehedtfvkiavvaiirlacekdn Ly++v+++N++eivk+L+++v++a++ +++++ ++i+ +c+++n ph01059 433 LYGMVSKKNLMEIVKKLMTHVDKAEGT-----TYRDELLTKIIDICSQSN 477 YqfptdaewcidvLleLLkltagsyvvaeaivvqiidiirkyPelreyaV Yq++t++ew+i++L+eL + +++++++ i++q+ d+ +++ ++r++aV ph01059 478 YQYITNFEWYISILVELTR--LEGTRHGHLIAAQMLDVAIRVKAIRKFAV 525 sqiitlL..aallesies...mpearaaaiWilGEygelipdiapceese sq+ +lL++a+ll+s +++++++e+++aa+Wi+GE++e++++ + ph01059 526 SQMSALLdsAHLLASSTQrngICEVLYAAAWICGEFSEHLQEP-H----- 569 psevesdidllreiae.nfslenlevraqlLtalvKLgltkpdikqQ... + l+ ++ +++++ + +++a+ ++ +vKL+ +i qQ+++ ph01059 570 --------HTLEAMLRpRVTTLPGHIQAVYVQNVVKLY---ASILQQkeq 608 ...ee.iqpveeliqsvlslalnssdnelElRDRAreylrllslad<-* +++e++q+v++l+ ++l ++ +s+d lE+++RA ++l+l+++ + ph01059 609 ageAEgAQAVTQLMVDRLPQFVQSAD--LEVQERASCILQLVKHIQ 652 PF02985.12.ls: domain 2 of 5, from 248 to 283: score 18.8, E = 0.018 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e+++ +p l + l+Dpdp V+ aA++ +++la+ ph01059 248 EsLR-PAFPRLKEKLEDPDPGVQSAAVNVICELARRN 283 PF02985.12.ls: domain 5 of 5, from 408 to 440: score 12.8, E = 1.1 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++ +l+l++l+D+d+++R+ A+ L ++++ ph01059 408 QsHK----DLILQCLDDKDESIRLRALDLLYGMVSKK 440 PF06375.2.fs: domain 1 of 2, from 713 to 972: score 562.5, E = 4e-166 *->mFqDEEqRHtKPRAPEADEqELARRREARRqEqAnnPFYiKssPsPq +F +EEqR K R EADE ELARRREAR+qEqAnnPFYiKssPsPq ph01059 713 VFHEEEQRRPKHRPSEADEEELARRREARKQEQANNPFYIKSSPSPQ 759 KRYqDAPGvEHiPvvqiDLsvPLKvPGmPLsDqYvKLEEERRHRqRLEKD KRYqD PGvEHiPvvqiDLsvPLKvPG+P+sDqYvKLEEERRHRq+LEKD ph01059 760 KRYQDTPGVEHIPVVQIDLSVPLKVPGLPMSDQYVKLEEERRHRQKLEKD 809 KRKKKKRERERRGtRRHRsLHtEsDEDiAPAqRvDivtEEmPEnALPsDE KR+KK++E+E++G RRH sL tEsDEDiAPAq vDivtEEmPEnALPsDE ph01059 810 KRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQQVDIVTEEMPENALPSDE 859 DDKDPnDPYRALDiDLDKPLADsEKLPvqKHRnAEtsKsPEKEDvPLvEK DDKDPnDPYRALDiDLDKPLADsEKLP+qKHRn EtsKsPEK DvP+vEK ph01059 860 DDKDPNDPYRALDIDLDKPLADSEKLPIQKHRNTETSKSPEK-DVPMVEK 908 KsKKPKKKEKKHKEKEREK.KKKEvE.kGEDLDFWLsttP.......PAA KsKKPKKKEKKHKEKER+K+KKKE E+k EDLDFWLsttP++ + + PA ph01059 909 KSKKPKKKEKKHKEKERDKeKKKEKEkKAEDLDFWLSTTPppapapaPAP 958 tPALEELEvnttvt<-* P EL vnt t ph01059 959 VPSTGELSVNTVTT 972 PF06375.2.ls: domain 1 of 1, from 713 to 1282: score 1093.0, E = 0 *->mFqDEEqRHtKPRAPEADEqELARRREARRqEqAnnPFYiKssPsPq +F +EEqR K R EADE ELARRREAR+qEqAnnPFYiKssPsPq ph01059 713 VFHEEEQRRPKHRPSEADEEELARRREARKQEQANNPFYIKSSPSPQ 759 KRYqDAPGvEHiPvvqiDLsvPLKvPGmPLsDqYvKLEEERRHRqRLEKD KRYqD PGvEHiPvvqiDLsvPLKvPG+P+sDqYvKLEEERRHRq+LEKD ph01059 760 KRYQDTPGVEHIPVVQIDLSVPLKVPGLPMSDQYVKLEEERRHRQKLEKD 809 KRKKKKRERERRGtRRHRsLHtEsDEDiAPAqRvDivtEEmPEnALPsDE KR+KK++E+E++G RRH sL tEsDEDiAPAq vDivtEEmPEnALPsDE ph01059 810 KRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQQVDIVTEEMPENALPSDE 859 DDKDPnDPYRALDiDLDKPLADsEKLPvqKHRnAEtsKsPEKEDvPLvEK DDKDPnDPYRALDiDLDKPLADsEKLP+qKHRn EtsKsPEK DvP+vEK ph01059 860 DDKDPNDPYRALDIDLDKPLADSEKLPIQKHRNTETSKSPEK-DVPMVEK 908 KsKKPKKKEKKHKEKEREK.KKKEvE.kGEDLDFWLsttP.......PAA KsKKPKKKEKKHKEKER+K+KKKE E+k EDLDFWLsttP++ + + PA ph01059 909 KSKKPKKKEKKHKEKERDKeKKKEKEkKAEDLDFWLSTTPppapapaPAP 958 tPALEELEvnttvtvLKEGqEEPRERnRmPKRtGsRtWRRnPPstRRRnt P EL vnt t E + E + P +++ ph01059 959 VPSTGELSVNTVTTPKDECEDAKTEAQGEEDDAEGQDQDKKSPKPKKKKH 1008 RKtRRsGPRtRGsPRRRCHqRmRRLLsPWRtAALEEEPLPPmssYiLLAE RK + + + ++ P A EEE LPP ssY LLAE ph01059 1009 RKEKEERTKGKKKSKKQPPGSEEAAGEPVQNGAPEEEQLPPESSYSLLAE 1058 nsYiKmtYDvqGsLqKDsqvtvsvvLEnqsDsFLKsmELnvLDsLnARLA nsY+Kmt D+ GsLq Dsqvtv++vLEn s s LK mEL vLDsLnAR+A ph01059 1059 NSYVKMTCDIRGSLQEDSQVTVAIVLENRSSSILKGMELSVLDSLNARMA 1108 RPEGssvHDGvPvPFqLPPGisnEAqFvFtiqsivmAqKLKGtLsFiAKn RP GssvHDGvPvPFqLPPG+snEAq+vFtiqsivmAqKLKGtLsFiAKn ph01059 1109 RPQGSSVHDGVPVPFQLPPGVSNEAQYVFTIQSIVMAQKLKGTLSFIAKN 1158 DEGstHEKLDFKLrFtCtsYLvttPCYrDAFAKLLEsGDLsmssiKvDGi DEG+tHEKLDF+L+F C sYL+ttPCY+DAFAKLLEsGDLsmssiKvDGi ph01059 1159 DEGATHEKLDFRLHFSCSSYLITTPCYSDAFAKLLESGDLSMSSIKVDGI 1208 smsFHnLLAKiCFHHRFsvvERvDsCAsmYsRsiqGHHvCLLvKKGEKsv msF nLLAKiCFHH FsvvERvDsCAsmYsRsiqGHHvCLLvKKGE sv ph01059 1209 RMSFQNLLAKICFHHHFSVVERVDSCASMYSRSIQGHHVCLLVKKGENSV 1258 svDGKCsDPtLLsnLLEEmKEtsGHvLsAAsHRRAAvvCtHWvqPGldkv svDGKCsD tLLsnLLEEmK t ph01059 1259 SVDGKCSDSTLLSNLLEEMKAT---------------------------- 1280 tivhlvdlavsvalillvilFYFAsLYsLAssPCqsPsqPGLFWLERtvP ph01059 - -------------------------------------------------- - vlmGla<-* la ph01059 1281 ----LA 1282 PF06375.2.fs: domain 2 of 2, from 1036 to 1280: score 620.9, E = 1e-183 *->PWRtAALEEEPLPPmssYiLLAEnsYiKmtYDvqGsLqKDsqvtvsv P A EEE LPP ssY LLAEnsY+Kmt D+ GsLq Dsqvtv++ ph01059 1036 PVQNGAPEEEQLPPESSYSLLAENSYVKMTCDIRGSLQEDSQVTVAI 1082 vLEnqsDsFLKsmELnvLDsLnARLARPEGssvHDGvPvPFqLPPGisnE vLEn s s LK mEL vLDsLnAR+ARP GssvHDGvPvPFqLPPG+snE ph01059 1083 VLENRSSSILKGMELSVLDSLNARMARPQGSSVHDGVPVPFQLPPGVSNE 1132 AqFvFtiqsivmAqKLKGtLsFiAKnDEGstHEKLDFKLrFtCtsYLvtt Aq+vFtiqsivmAqKLKGtLsFiAKnDEG+tHEKLDF+L+F C sYL+tt ph01059 1133 AQYVFTIQSIVMAQKLKGTLSFIAKNDEGATHEKLDFRLHFSCSSYLITT 1182 PCYrDAFAKLLEsGDLsmssiKvDGismsFHnLLAKiCFHHRFsvvERvD PCY+DAFAKLLEsGDLsmssiKvDGi msF nLLAKiCFHH FsvvERvD ph01059 1183 PCYSDAFAKLLESGDLSMSSIKVDGIRMSFQNLLAKICFHHHFSVVERVD 1232 sCAsmYsRsiqGHHvCLLvKKGEKsvsvDGKCsDPtLLsnLLEEmKEt<- sCAsmYsRsiqGHHvCLLvKKGE svsvDGKCsD tLLsnLLEEmK t ph01059 1233 SCASMYSRSIQGHHVCLLVKKGENSVSVDGKCSDSTLLSNLLEEMKAT 1280 * ph01059 - - //