hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-12220231/chunk_1/iprscan-20080813-12220231.nocrc
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Query sequence: ph01164
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02815.9.fs MIR domain                                      48.9    1.9e-14   1
PF02815.9.ls MIR domain                                      40.7    4.6e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02815.9.ls   1/1      44   218 ..     1   208 []    40.7  4.6e-09
PF02815.9.fs   1/1      58   186 ..    14   178 ..    48.9  1.9e-14

Alignments of top-scoring domains:
PF02815.9.ls: domain 1 of 1, from 44 to 218: score 40.7, E = 4.6e-09
                   *->GyLhsgdvlrl...fhseQqqiLtyphldqnndldvvflRttsyesg
                       +L s+   + +++  s+Qqq+++yp +d nn               
     ph01164    44    SLLTSH--RYEngrGSSHQQQVTCYPFKDVNNW-------------- 74   

                   avatssrsLWriEvvqrdkwrggagkwellkdGsvfRlrHltTGrYLhsh
                            W++   +r     +      +++G+ + l H +T r L  h
     ph01164    75 ---------WIVKDPRRHQLVVSSPPR-PVRHGDMVQLVHGMTTRSLNTH 114  

                   dekdppvsekedwqkevsaYglrgfpgdatnDdkwrveifekksttgmgq
                   d+  +p+s+     +evs+Y    +   a  +  wr+ei++  s+    +
     ph01164   115 DVA-APLSPH---SQEVSCYIDYNISMPA-QNL-WRLEIVNRGSD----T 154  

                   erikpgdskvrLrHvcTgcwLfshsvklkkprwGfeqeektc..akkgkd
                   +  k++ s vr+ Hv T+ +L  + ++l  p+wG  q e + ++++ g +
     ph01164   155 DVWKTILSEVRFVHVNTSAVLKLSGAHL--PDWGYRQLEIVGekLSRGYH 202  

                   egtmwyiEdkenfaLp<-*
                    +t w++E++   a     
     ph01164   203 GSTVWNVEEHRYGASQ    218  

PF02815.9.fs: domain 1 of 1, from 58 to 186: score 48.9, E = 1.9e-14
                   *->seQqqiLtyphldqnndldvvflRttsyesgavatssrsLWriEvvq
                      s+Qqq+++yp +d nn                        W++   +
     ph01164    58    SHQQQVTCYPFKDVNNW-----------------------WIVKDPR 81   

                   rdkwrggagkwellkdGsvfRlrHltTGrYLhshdekdppvsekedwqke
                   r     +      +++G+ + l H +T r L  hd+  +p+s+     +e
     ph01164    82 RHQLVVSSPPR-PVRHGDMVQLVHGMTTRSLNTHDVA-APLSPH---SQE 126  

                   vsaYglrgfpgdatnDdkwrveifekksttgmgqerikpgdskvrLrHvc
                   vs+Y    +   a  +  wr+ei++  s+    ++  k++ s vr+ Hv 
     ph01164   127 VSCYIDYNISMPA-QNL-WRLEIVNRGSD----TDVWKTILSEVRFVHVN 170  

                   TgcwLfshsvklkkprwG<-*
                   T+ +L  + ++l  p+wG   
     ph01164   171 TSAVLKLSGAHL--PDWG    186  

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