hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-12220231/chunk_1/iprscan-20080813-12220231.nocrc
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Query sequence: ph01164
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00472                                                  82.5    5.1e-20   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00472    1/3      27    80 ..     1    79 []    10.3      4.8
SM00472    2/3      91   148 ..     1    79 []    47.8  1.5e-09
SM00472    3/3     155   212 ..     1    79 []    24.4    0.016

Alignments of top-scoring domains:
SM00472: domain 1 of 3, from 27 to 80: score 10.3, E = 4.8
                   *->gevvrwGsvvRLrHvaTgry..LhshdvkLlldssyprdsplppwgs
                        ++  G    L H a  ry +L ++++            + ++ +s
     ph01164    27    QSALITG----LSHRAWPRYisLLTSHRY-----------ENGRGSS 58   

                   gqqeVtgygepgikgdslvfvqhdannlWlvepv<-*
                   +qq+Vt+y+++            d nn+W+v  +   
     ph01164    59 HQQQVTCYPFK------------DVNNWWIVKDP    80   

SM00472: domain 2 of 3, from 91 to 148: score 47.8, E = 1.5e-09
                   *->gevvrwGsvvRLrHvaTgryLhshdvkLlldssyprdsplppwgsgq
                      +++vr+G+ v+L+H++T r L +hdv              +p +++ 
     ph01164    91    PRPVRHGDMVQLVHGMTTRSLNTHDVA-------------APLSPHS 124  

                   qeVtgygepgikgdslvfvqhdannlWlvepv<-*
                   qeV++y +  i+          a+nlW+ e+v   
     ph01164   125 QEVSCYIDYNISM--------PAQNLWRLEIV    148  

SM00472: domain 3 of 3, from 155 to 212: score 24.4, E = 0.016
                   *->gevvrwGsvvRLrHvaTgryLhshdvkLlldssyprdsplppwgsgq
                      + + ++ s+vR++Hv+T   L ++++             lp wg  q
     ph01164   155    DVWKTILSEVRFVHVNTSAVLKLSGAH------------LPDWGYRQ 189  

                   qeVtgygepgikgdslvfvqhdannlWlvepv<-*
                    e++g + +++ +        + ++ W+ve++   
     ph01164   190 LEIVGEKLSRG-Y--------HGSTVWNVEEH    212  

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