hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-12275965/chunk_1/iprscan-20080813-12275965.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ph01207 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00002.15.ls 7 transmembrane receptor (Secretin family) 318.0 1.5e-92 1 PF00002.15.fs 7 transmembrane receptor (Secretin family) 316.0 6.1e-92 1 PF00090.9.fs Thrombospondin type 1 domain 124.2 9.5e-37 3 PF00090.9.ls Thrombospondin type 1 domain 129.8 6.8e-36 3 PF01825.11.fs Latrophilin/CL-1-like GPS domain 77.1 3.7e-22 1 PF01825.11.ls Latrophilin/CL-1-like GPS domain 79.0 1.3e-20 1 PF02793.12.fs Hormone receptor domain 52.0 1.4e-13 1 PF02793.12.ls Hormone receptor domain 53.8 5.3e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00090.9.ls 1/3 330 378 .. 1 55 [] 52.9 9.6e-13 PF00090.9.fs 1/3 330 378 .. 1 55 [] 51.1 1e-14 PF00090.9.ls 2/3 385 433 .. 1 55 [] 37.4 4.5e-08 PF00090.9.fs 2/3 385 433 .. 1 55 [] 35.5 4.8e-10 PF00090.9.fs 3/3 441 489 .. 1 55 [] 37.6 1.1e-10 PF00090.9.ls 3/3 441 489 .. 1 55 [] 39.5 1.1e-08 PF02793.12.ls 1/1 493 554 .. 1 78 [] 53.8 5.3e-13 PF02793.12.fs 1/1 493 554 .. 1 78 [] 52.0 1.4e-13 PF01825.11.fs 1/1 832 880 .. 1 48 [] 77.1 3.7e-22 PF01825.11.ls 1/1 832 880 .. 1 48 [] 79.0 1.3e-20 PF00002.15.fs 1/1 891 1171 .. 1 293 [] 316.0 6.1e-92 PF00002.15.ls 1/1 891 1171 .. 1 293 [] 318.0 1.5e-92 Alignments of top-scoring domains: PF00090.9.ls: domain 1 of 3, from 330 to 378: score 52.9, E = 9.6e-13 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +W+ WS CS +CG G+r+R R+c+ p Pq +gg+ C+g+ + t+ ph01207 330 EEWGSWSLCSRSCGRGSRSRMRTCV-P-PQ-HGGKACEGPELQ--TK 371 aCdmmdkC<-* C +m C ph01207 372 LC-SMAAC 378 PF00090.9.fs: domain 1 of 3, from 330 to 378: score 51.1, E = 1e-14 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +W+ WS CS +CG G+r+R R+c+ p Pq +gg+ C+g+ + t+ ph01207 330 EEWGSWSLCSRSCGRGSRSRMRTCV-P-PQ-HGGKACEGPELQ--TK 371 aCdmmdkC<-* C +m C ph01207 372 LC-SMAAC 378 PF00090.9.ls: domain 2 of 3, from 385 to 433: score 37.4, E = 4.5e-08 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +W++W pCS +C +G+++R R+c P + Ctg ++ t+ ph01207 385 LEWGPWGPCSTSCANGTQQRSRKCSVAGP---AWATCTGALTD--TR 426 aCdmmdkC<-* C + +C ph01207 427 EC-SNLEC 433 PF00090.9.fs: domain 2 of 3, from 385 to 433: score 35.5, E = 4.8e-10 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +W++W pCS +C +G+++R R+c P + Ctg ++ t+ ph01207 385 LEWGPWGPCSTSCANGTQQRSRKCSVAGP---AWATCTGALTD--TR 426 aCdmmdkC<-* C + +C ph01207 427 EC-SNLEC 433 PF00090.9.fs: domain 3 of 3, from 441 to 489: score 37.6, E = 1.1e-10 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pW WS CS+TC G + R R+c+++ +g pC+g+ +e ++ ph01207 441 GPWNAWSLCSKTCDTGWQRRFRMCQATG---TQGYPCEGTGEE--VK 482 aCdmmdkC<-* +C + + C ph01207 483 PC-SEKRC 489 PF00090.9.ls: domain 3 of 3, from 441 to 489: score 39.5, E = 1.1e-08 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pW WS CS+TC G + R R+c+++ +g pC+g+ +e ++ ph01207 441 GPWNAWSLCSKTCDTGWQRRFRMCQATG---TQGYPCEGTGEE--VK 482 aCdmmdkC<-* +C + + C ph01207 483 PC-SEKRC 489 PF02793.12.ls: domain 1 of 1, from 493 to 554: score 53.8, E = 5.3e-13 *->glgCprtwDgitCWPrtpaGqlvvvpCPdyfsgfnydttgdfssgna +++C ++ +++ W+ ++aG+++ ++CP ++sg + ph01207 493 HEMCRDEYVMLMTWKKAAAGEIIYNKCPPNASGS-----------AS 528 yRnClenGwwerhpnsnwpwpnysaCtspey<-* +R+ l+ ++ + +w p +++C+s+ey ph01207 529 RRCLLSAQGVA-----YWGLPSFARCISHEY 554 PF02793.12.fs: domain 1 of 1, from 493 to 554: score 52.0, E = 1.4e-13 *->glgCprtwDgitCWPrtpaGqlvvvpCPdyfsgfnydttgdfssgna +++C ++ +++ W+ ++aG+++ ++CP ++sg + ph01207 493 HEMCRDEYVMLMTWKKAAAGEIIYNKCPPNASGS-----------AS 528 yRnClenGwwerhpnsnwpwpnysaCtspey<-* +R+ l+ ++ + +w p +++C+s+ey ph01207 529 RRCLLSAQGVA-----YWGLPSFARCISHEY 554 PF01825.11.fs: domain 1 of 1, from 832 to 880: score 77.1, E = 3.7e-22 *->snptCvfWdese.ggq.GgWstdGCqlgvssndthttClCnHLTsFA + p+C++Wd+s+ + ++G+W+t+ Cq+ +++++ ht+C+C+HL++FA ph01207 832 TDPHCASWDYSRaDASsGDWDTENCQT-LETQAAHTRCQCQHLSTFA 877 vLm<-* vL ph01207 878 VLA 880 PF01825.11.ls: domain 1 of 1, from 832 to 880: score 79.0, E = 1.3e-20 *->snptCvfWdese.ggq.GgWstdGCqlgvssndthttClCnHLTsFA + p+C++Wd+s+ + ++G+W+t+ Cq+ +++++ ht+C+C+HL++FA ph01207 832 TDPHCASWDYSRaDASsGDWDTENCQT-LETQAAHTRCQCQHLSTFA 877 vLm<-* vL ph01207 878 VLA 880 PF00002.15.fs: domain 1 of 1, from 891 to 1171: score 316.0, E = 6.1e-92 *->lllLkviytVGyslS.LvaLllAiaifllFRkLhCtRNyIHlNLfaS + +++v +G+++S ++ L+l ++ ++R ++++R++I+lN+++S ph01207 891 AGSPSVPLVIGCAVScMALLTLLAIYAAFWRFIKSERSIILLNFCLS 937 fiLraisflikdavlfnsvglseadqlsweeslhcsasagkitmivvVgC ++ ++i++l+++ ++ +++ C ph01207 938 ILASNILILVGQSRVLSKGV-----------------------------C 958 kvvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffserkylwwYlliG ++ a+flh+ffl++F+W+L+E+++ ++++ + ++++ r+ ++++l++G ph01207 959 TMTAAFLHFFFLSSFCWVLTEAWQSYLAV---I-GRMRTRLVRKRFLCLG 1004 WGvPavfVgiWaivrpdkagygnegCCWlsnedngyfwWiikGPvllvil WG+Pa++V+++++++++k gyg+ +CWls+ +g++++ ++GP+++++l ph01207 1005 WGLPALVVAVSVGFTRTK-GYGTSSYCWLSL--EGGLLYAFVGPAAVIVL 1051 vNfilFinilriLvqKlri.d.slspdmgetdqyrk.............. vN+++ i+++++L++++ i+d+s+++++g+ ++ + + + + + ++ ph01207 1052 VNMLIGIIVFNKLMARDGIsDkSKKQRAGSERCPWAslllpcsacgavps 1101 ...........krlaKStLlLlPLLGitwvlflfapeddarGvssivfly + ++ + ++ +++++S++++lPLL +tw+ +++a++d+ +s++f++ ph01207 1102 pllssasarnaMASLWSSCVVLPLLALTWMSAVLAMTDR----RSVLFQA 1147 lflilnSfQGFfVavlYCFLNgEV<-* lf+++nS QGF++ ++CFL++EV ph01207 1148 LFAVFNSAQGFVITAVHCFLRREV 1171 PF00002.15.ls: domain 1 of 1, from 891 to 1171: score 318.0, E = 1.5e-92 *->lllLkviytVGyslS.LvaLllAiaifllFRkLhCtRNyIHlNLfaS + +++v +G+++S ++ L+l ++ ++R ++++R++I+lN+++S ph01207 891 AGSPSVPLVIGCAVScMALLTLLAIYAAFWRFIKSERSIILLNFCLS 937 fiLraisflikdavlfnsvglseadqlsweeslhcsasagkitmivvVgC ++ ++i++l+++ ++ +++ C ph01207 938 ILASNILILVGQSRVLSKGV-----------------------------C 958 kvvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffserkylwwYlliG ++ a+flh+ffl++F+W+L+E+++ ++++ + ++++ r+ ++++l++G ph01207 959 TMTAAFLHFFFLSSFCWVLTEAWQSYLAV---I-GRMRTRLVRKRFLCLG 1004 WGvPavfVgiWaivrpdkagygnegCCWlsnedngyfwWiikGPvllvil WG+Pa++V+++++++++k gyg+ +CWls+ +g++++ ++GP+++++l ph01207 1005 WGLPALVVAVSVGFTRTK-GYGTSSYCWLSL--EGGLLYAFVGPAAVIVL 1051 vNfilFinilriLvqKlri.d.slspdmgetdqyrk.............. vN+++ i+++++L++++ i+d+s+++++g+ ++ + + + + + ++ ph01207 1052 VNMLIGIIVFNKLMARDGIsDkSKKQRAGSERCPWAslllpcsacgavps 1101 ...........krlaKStLlLlPLLGitwvlflfapeddarGvssivfly + ++ + ++ +++++S++++lPLL +tw+ +++a++d+ +s++f++ ph01207 1102 pllssasarnaMASLWSSCVVLPLLALTWMSAVLAMTDR----RSVLFQA 1147 lflilnSfQGFfVavlYCFLNgEV<-* lf+++nS QGF++ ++CFL++EV ph01207 1148 LFAVFNSAQGFVITAVHCFLRREV 1171 //