hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-12275965/chunk_1/iprscan-20080813-12275965.nocrc
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Query sequence: ph01207
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00209                                                 154.8    9.1e-42   3
SM00303                                                  84.2    1.6e-20   1
SM00008                                                  75.0    9.4e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00209    1/3     329   379 ..     1    66 []    60.3  2.4e-13
SM00209    2/3     384   434 ..     1    66 []    44.9  1.1e-08
SM00209    3/3     440   490 ..     1    66 []    49.5  4.3e-10
SM00008    1/1     492   558 ..     1    89 []    75.0  9.4e-18
SM00303    1/1     832   885 ..     1    51 []    84.2  1.6e-20

Alignments of top-scoring domains:
SM00209: domain 1 of 3, from 329 to 379: score 60.3, E = 2.4e-13
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w eW++WS CS ++CG+G      r+R R     +c pp+     gg
     ph01207   329    WEEWGSWSLCS-RSCGRG-----SRSRMR-----TCVPPQ----HGG 360  

                   epCs....EtrpCntqpnLqpCp<-*
                   + C++++ +t+ C++     +Cp   
     ph01207   361 KACEgpelQTKLCSMA----ACP    379  

SM00209: domain 2 of 3, from 384 to 434: score 44.9, E = 1.1e-08
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w eW++W+pCS  +C  G     +++R+R      cs ++p+     
     ph01207   384    WLEWGPWGPCS-TSCANG-----TQQRSR-----KCSVAGPAW---- 415  

                   epCs....EtrpCntqpnLqpCp<-*
                   + C++  ++tr+C+      +Cp   
     ph01207   416 ATCTgaltDTRECSNL----ECP    434  

SM00209: domain 3 of 3, from 440 to 490: score 49.5, E = 4.3e-10
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w++W  WS CS +tC  G     +++R R      c + +      g
     ph01207   440    WGPWNAWSLCS-KTCDTG-----WQRRFR-----MCQATG----TQG 471  

                   epCs....EtrpCntqpnLqpCp<-*
                    pC+++++E++pC++      Cp   
     ph01207   472 YPCEgtgeEVKPCSEK----RCP    490  

SM00008: domain 1 of 1, from 492 to 558: score 75.0, E = 9.4e-18
                   *->tdlgCpatwDgiiCWpsTpaGqlvavpCPeyfsgfsnktggNrtqGn
                       +++C  ++ ++++W++++aG++++++CP ++sg             
     ph01207   492    FHEMCRDEYVMLMTWKKAAAGEIIYNKCPPNASGS------------ 526  

                   asRnCtedt.GvGgWsepfpgaeSnrtWpnysnCtsndyeelk<-*
                   asR+C+++++Gv++W             p +++C s++y+ l    
     ph01207   527 ASRRCLLSAqGVAYWGL-----------PSFARCISHEYRYLY    558  

SM00303: domain 1 of 1, from 832 to 885: score 84.2, E = 1.6e-20
                   *->snpiCvfWdese....tgeWstrGCelvetnkpthttCsCnHLTsFA
                      + p+C++Wd+s+ + ++g W+t++C+++et++  ht+C+C+HL++FA
     ph01207   832    TDPHCASWDYSRadasSGDWDTENCQTLETQA-AHTRCQCQHLSTFA 877  

                   vLmdvspn<-*
                   vL++++ +   
     ph01207   878 VLAQPPKD    885  

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