hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17224640/chunk_1/iprscan-20090618-17224640.nocrc
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Query sequence: pj00226
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00233.9.fs 3'5'-cyclic nucleotide phosphodiesterase     450.0     6e-152   1
PF00233.9.ls 3'5'-cyclic nucleotide phosphodiesterase     451.9   7.8e-133   1
PF08499.2.fs 3'5'-cyclic nucleotide phosphodiesterase N   117.7    4.1e-33   1
PF08499.2.ls 3'5'-cyclic nucleotide phosphodiesterase N   119.6    8.2e-33   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF08499.2.fs   1/1     134   194 ..     1    63 []   117.7  4.1e-33
PF08499.2.ls   1/1     134   194 ..     1    63 []   119.6  8.2e-33
PF00233.9.fs   1/1     279   511 ..     1   255 []   450.0   6e-152
PF00233.9.ls   1/1     279   511 ..     1   255 []   451.9 7.8e-133

Alignments of top-scoring domains:
PF08499.2.fs: domain 1 of 1, from 134 to 194: score 117.7, E = 4.1e-33
                   *->rLlDeddelsevqsesvpdeaeVreWLastftrqvgtakskseekpk
                      rLlD++dels++qs++vp+e  Vr+WLastftrq+g++ ++s+ekp+
     pj00226   134    RLLDTEDELSDIQSDAVPSE--VRDWLASTFTRQMGMMLRRSDEKPR 178  

                   frsvanavqagIivek<-*
                   f+s+++avqagI+ve+   
     pj00226   179 FKSIVHAVQAGIFVER    194  

PF08499.2.ls: domain 1 of 1, from 134 to 194: score 119.6, E = 8.2e-33
                   *->rLlDeddelsevqsesvpdeaeVreWLastftrqvgtakskseekpk
                      rLlD++dels++qs++vp+e  Vr+WLastftrq+g++ ++s+ekp+
     pj00226   134    RLLDTEDELSDIQSDAVPSE--VRDWLASTFTRQMGMMLRRSDEKPR 178  

                   frsvanavqagIivek<-*
                   f+s+++avqagI+ve+   
     pj00226   179 FKSIVHAVQAGIFVER    194  

PF00233.9.fs: domain 1 of 1, from 279 to 511: score 450.0, E = 6e-152
                   *->YHNwiHAfdVtQtthlLlltlaleryLtdlEvLalvfAAaiHDvDHr
                      YHN++HA+dVtQt+h+Ll  ++  ++Lt+lE++a++f+AaiHD++H+
     pj00226   279    YHNLMHAADVTQTVHYLLYKTGVANWLTELEIFAIIFSAAIHDYEHT 325  

                   GTnNsFqinsLqkSeLAlLYndegSVLEnHHlaqafkLLqd.EecnIfqN
                   GT+N+F+i++  +S+ A+LYnd+ SVLEnHHl++a++LLqd+Ee+nI++N
     pj00226   326 GTTNNFHIQT--RSDPAILYNDR-SVLENHHLSAAYRLLQDdEEMNILIN 372  

                   LskkdfrtlrdlvieaILATDmslHlqklkdlktmveqkkvyetgvEWtq
                   Lsk+d+r+ r lvie++ ATDms+H+q++k +kt+++q++          
     pj00226   373 LSKDDWREFRTLVIEMVMATDMSCHFQQIKAMKTALQQPEA--------- 413  

                   YlldnythkilllsllmtAADLSnpTKpwklskRwAelimeEFFeQGDlE
                     +     k ++lsl+++ AD+S+p+K w l++Rw++ + eEFF+QGD+E
     pj00226   414 --IE----KPKALSLMLHTADISHPAKAWDLHHRWTMSLLEEFFRQGDRE 457  

                   relGldrpspmcDRtsAayvpksQvgFidfIvePvfklLadvvekDdiqp
                   +elGl+ +sp+cDR+s ++v++sQvgFidfIveP+f +L+d +ek ++ p
     pj00226   458 AELGLP-FSPLCDRKS-TMVAQSQVGFIDFIVEPTFTVLTDMTEK-IVSP 504  

                   lldtiedNr<-*
                   l+d  e ++   
     pj00226   505 LID--ETSQ    511  

PF00233.9.ls: domain 1 of 1, from 279 to 511: score 451.9, E = 7.8e-133
                   *->YHNwiHAfdVtQtthlLlltlaleryLtdlEvLalvfAAaiHDvDHr
                      YHN++HA+dVtQt+h+Ll  ++  ++Lt+lE++a++f+AaiHD++H+
     pj00226   279    YHNLMHAADVTQTVHYLLYKTGVANWLTELEIFAIIFSAAIHDYEHT 325  

                   GTnNsFqinsLqkSeLAlLYndegSVLEnHHlaqafkLLq.dEecnIfqN
                   GT+N+F+i++  +S+ A+LYnd+ SVLEnHHl++a++LLq+dEe+nI++N
     pj00226   326 GTTNNFHIQT--RSDPAILYNDR-SVLENHHLSAAYRLLQdDEEMNILIN 372  

                   LskkdfrtlrdlvieaILATDmslHlqklkdlktmveqkkvyetgvEWtq
                   Lsk+d+r+ r lvie++ ATDms+H+q++k +kt+++q++          
     pj00226   373 LSKDDWREFRTLVIEMVMATDMSCHFQQIKAMKTALQQPEA--------- 413  

                   YlldnythkilllsllmtAADLSnpTKpwklskRwAelimeEFFeQGDlE
                     +     k ++lsl+++ AD+S+p+K w l++Rw++ + eEFF+QGD+E
     pj00226   414 --IE----KPKALSLMLHTADISHPAKAWDLHHRWTMSLLEEFFRQGDRE 457  

                   relGldrpspmcDRtsAayvpksQvgFidfIvePvfklLadvvekDdiqp
                   +elGl+ +sp+cDR+s ++v++sQvgFidfIveP+f +L+d +ek ++ p
     pj00226   458 AELGLP-FSPLCDRKS-TMVAQSQVGFIDFIVEPTFTVLTDMTEK-IVSP 504  

                   lldtiedNr<-*
                   l+d  e ++   
     pj00226   505 LID--ETSQ    511  

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