hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17224640/chunk_1/iprscan-20090618-17224640.nocrc
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Query sequence: pj00226
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00471                                                  34.2    1.7e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00471    1/1     277   442 ..     1    59 []    34.2  1.7e-05

Alignments of top-scoring domains:
SM00471: domain 1 of 1, from 277 to 442: score 34.2, E = 1.7e-05
                   *->hgetrleHslrVaqlarela..............ellllAALLHDiG
                      +++++l H+ +V+q +++l+ +++  +  ++ + +++++ A  HD+ 
     pj00226   277    NPYHNLMHAADVTQTVHYLLyktgvanwlteleiFAIIFSAAIHDYE 323  

                   kp................................................
                   + +  ++ +   ++++    ++++  ++++ +   +   ++++ +   + 
     pj00226   324 HTgttnnfhiqtrsdpailyndrsvlenhhlsaayrllqddeemnilinl 373  

                   ............................................sleari
                   ++++ ++ +    +     + + +    +  +     ++  +++  + ++
     pj00226   374 skddwrefrtlviemvmatdmschfqqikamktalqqpeaiekpKALSLM 423  

                   vklADrldalrrdr.yrrv<-*
                   ++ AD++++++++  + r+   
     pj00226   424 LHTADISHPAKAWDlHHRW    442  

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