hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17293062/chunk_1/iprscan-20090618-17293062.nocrc
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Query sequence: pj00267
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08620.1.fs RPAP1-like, C-terminal                         136.4    4.9e-39   1
PF08620.1.ls RPAP1-like, C-terminal                         138.3    1.9e-38   1
PF08621.1.fs RPAP1-like, N-terminal                          86.5    1.8e-24   1
PF08621.1.ls RPAP1-like, N-terminal                          88.5    1.9e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08621.1.fs   1/1     246   294 ..     1    49 []    86.5  1.8e-24
PF08621.1.ls   1/1     246   294 ..     1    49 []    88.5  1.9e-23
PF08620.1.fs   1/1     376   447 ..     1    80 []   136.4  4.9e-39
PF08620.1.ls   1/1     376   447 ..     1    80 []   138.3  1.9e-38

Alignments of top-scoring domains:
PF08621.1.fs: domain 1 of 1, from 246 to 294: score 86.5, E = 1.8e-24
                   *->aqrIheENlkkLqsMSpeEIeqEqeELlesLDPkLlemLkkRankke
                      aq IheEN+++Lq M peEI+qEq++Ll++LDP+L+++L++++ ++e
     pj00267   246    AQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQE 292  

                   ks<-*
                   ++   
     pj00267   293 QT    294  

PF08621.1.ls: domain 1 of 1, from 246 to 294: score 88.5, E = 1.9e-23
                   *->aqrIheENlkkLqsMSpeEIeqEqeELlesLDPkLlemLkkRankke
                      aq IheEN+++Lq M peEI+qEq++Ll++LDP+L+++L++++ ++e
     pj00267   246    AQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQE 292  

                   ks<-*
                   ++   
     pj00267   293 QT    294  

PF08620.1.fs: domain 1 of 1, from 376 to 447: score 136.4, E = 4.9e-39
                   *->lselRFDFkGelippsesledeKedipthlGLHHHGEepeaAGYTlp
                       +++RF+++Gel+ p++       d+pthlGLHHHGEe+e+AGY+l+
     pj00267   376    RMQARFSLQGELLAPDV-------DLPTHLGLHHHGEEAERAGYSLQ 415  

                   ELlhLsRSsvpsQRciAlqtLgrIlyrlgakge<-*
                   EL+hL RS+v +QR +Al++L+++++r++ +ge   
     pj00267   416 ELFHLTRSQVSQQRALALHVLAQVISRAQ-AGE    447  

PF08620.1.ls: domain 1 of 1, from 376 to 447: score 138.3, E = 1.9e-38
                   *->lselRFDFkGelippsesledeKedipthlGLHHHGEepeaAGYTlp
                       +++RF+++Gel+ p++       d+pthlGLHHHGEe+e+AGY+l+
     pj00267   376    RMQARFSLQGELLAPDV-------DLPTHLGLHHHGEEAERAGYSLQ 415  

                   ELlhLsRSsvpsQRciAlqtLgrIlyrlgakge<-*
                   EL+hL RS+v +QR +Al++L+++++r++ +ge   
     pj00267   416 ELFHLTRSQVSQQRALALHVLAQVISRAQ-AGE    447  

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