# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Opj00267.fasta.nr -Q pj00267.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 pj00267, 1415 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8984670 sequences Expectation_n fit: rho(ln(x))= 5.6205+/-0.000191; mu= 13.7581+/- 0.011 mean_var=85.6248+/-16.776, 0's: 31 Z-trim: 34 B-trim: 3129 in 1/64 Lambda= 0.138604 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|119612910|gb|EAW92504.1| RNA polymerase II asso (1393) 9280 1866.5 0 gi|24430139|ref|NP_056355.2| RNA polymerase II ass (1393) 9276 1865.7 0 gi|74733434|sp|Q9BWH6.2|RPAP1_HUMAN RecName: Full= (1393) 9275 1865.5 0 gi|114656478|ref|XP_510325.2| PREDICTED: RNA polym (1393) 9228 1856.1 0 gi|109080733|ref|XP_001101155.1| PREDICTED: simila (1393) 8881 1786.7 0 gi|119612909|gb|EAW92503.1| RNA polymerase II asso (1315) 8427 1695.9 0 gi|158261471|dbj|BAF82913.1| unnamed protein produ (1195) 7957 1601.9 0 gi|149692044|ref|XP_001503457.1| PREDICTED: simila (1393) 7932 1597.0 0 gi|74000205|ref|XP_544632.2| PREDICTED: similar to (1394) 7774 1565.4 0 gi|145566939|sp|A0JN53.1|RPAP1_BOVIN RecName: Full (1395) 7662 1543.0 0 gi|114656484|ref|XP_001150221.1| PREDICTED: RNA po (1156) 7630 1536.5 0 gi|123780902|sp|Q3T1I9.1|RPAP1_RAT RecName: Full=R (1400) 7478 1506.2 0 gi|55730221|emb|CAH91834.1| hypothetical protein [ (1074) 6574 1325.3 0 gi|109731409|gb|AAI17975.1| RNA polymerase II asso (1409) 6065 1223.6 0 gi|109730829|gb|AAI17974.1| RNA polymerase II asso (1409) 6049 1220.4 0 gi|145566940|sp|Q80TE0.2|RPAP1_MOUSE RecName: Full (1409) 6048 1220.2 0 gi|74147477|dbj|BAE38647.1| unnamed protein produc (1409) 6044 1219.4 0 gi|74195684|dbj|BAE39647.1| unnamed protein produc (1409) 6039 1218.4 0 gi|74149579|dbj|BAE36419.1| unnamed protein produc (1290) 5372 1085.0 0 gi|10434402|dbj|BAB14247.1| unnamed protein produc ( 772) 5159 1042.3 0 gi|30388713|gb|AAH51680.1| Rpap1 protein [Mus musc ( 799) 4376 885.7 0 gi|5911955|emb|CAB55952.1| hypothetical protein [H ( 633) 4305 871.4 0 gi|119612911|gb|EAW92505.1| RNA polymerase II asso ( 607) 4126 835.6 0 gi|149023033|gb|EDL79927.1| RNA polymerase II asso ( 895) 4079 826.4 0 gi|119612908|gb|EAW92502.1| RNA polymerase II asso ( 553) 3673 745.0 3.7e-212 gi|148696026|gb|EDL27973.1| RNA polymerase II asso (1328) 3436 697.9 1.4e-197 gi|118091619|ref|XP_421141.2| PREDICTED: similar t (1325) 3186 647.9 1.5e-182 gi|224051155|ref|XP_002199018.1| PREDICTED: RNA po (1423) 2846 580.0 4.7e-162 gi|50949393|emb|CAB75675.2| hypothetical protein [ ( 398) 2686 547.6 7.5e-153 gi|47230102|emb|CAG10516.1| unnamed protein produc (1443) 2362 483.2 6.5e-133 gi|47125215|gb|AAH70764.1| MGC83792 protein [Xenop (1421) 2288 468.4 1.8e-128 gi|10801656|dbj|BAB16745.1| hypothetical protein [ ( 301) 1972 404.7 5.7e-110 gi|15126571|gb|AAH12218.1| Rpap1 protein [Mus musc ( 295) 1681 346.5 1.9e-92 gi|189441999|gb|AAI67356.1| LOC100170469 protein [ ( 548) 1628 336.1 4.7e-89 gi|50414577|gb|AAH77222.1| LOC445849 protein [Xeno ( 531) 1575 325.5 7e-86 gi|124481862|gb|AAI33246.1| LOC445849 protein [Xen ( 529) 1574 325.3 8.1e-86 gi|26335325|dbj|BAC31363.1| unnamed protein produc ( 262) 1256 261.5 6.5e-67 gi|219484075|ref|XP_002239111.1| hypothetical prot (1330) 1184 247.6 4.9e-62 gi|156227825|gb|EDO48627.1| predicted protein [Nem (1151) 1125 235.8 1.6e-58 gi|115692080|ref|XP_793628.2| PREDICTED: similar t (1457) 797 170.2 1e-38 gi|229282490|gb|EEN53239.1| hypothetical protein B (1274) 769 164.6 4.6e-37 gi|149619901|ref|XP_001521420.1| PREDICTED: simila ( 148) 578 125.7 2.7e-26 gi|198425413|ref|XP_002124620.1| PREDICTED: simila ( 959) 561 122.9 1.2e-24 gi|26332379|dbj|BAC25083.1| unnamed protein produc ( 97) 515 113.0 1.2e-22 gi|156537520|ref|XP_001607465.1| PREDICTED: simila (1210) 482 107.2 8.3e-20 gi|189241205|ref|XP_970145.2| PREDICTED: similar t (1125) 447 100.2 1e-17 gi|110768245|ref|XP_624143.2| PREDICTED: similar t (1030) 439 98.5 2.8e-17 gi|212510298|gb|EEB13497.1| predicted protein [Ped (1352) 401 91.0 6.8e-15 gi|167867383|gb|EDS30766.1| conserved hypothetical ( 872) 384 87.5 5.1e-14 gi|190583950|gb|EDV24020.1| hypothetical protein T ( 750) 371 84.8 2.7e-13 >>gi|119612910|gb|EAW92504.1| RNA polymerase II associat (1393 aa) initn: 9280 init1: 9280 opt: 9280 Z-score: 10019.9 bits: 1866.5 E(): 0 Smith-Waterman score: 9280; 99.928% identity (99.928% similar) in 1393 aa overlap (23-1415:1-1393) 10 20 30 40 50 60 pj0026 EGTPTRRHCWRESYWGGSWSSKMLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR :::::::::::::::::::::::::::::::::::::: gi|119 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR 10 20 30 70 80 90 100 110 120 pj0026 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH 40 50 60 70 80 90 130 140 150 160 170 180 pj0026 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA 100 110 120 130 140 150 190 200 210 220 230 240 pj0026 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ 160 170 180 190 200 210 250 260 270 280 290 300 pj0026 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE 220 230 240 250 260 270 310 320 330 340 350 360 pj0026 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH 280 290 300 310 320 330 370 380 390 400 410 420 pj0026 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL 340 350 360 370 380 390 430 440 450 460 470 480 pj0026 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV 400 410 420 430 440 450 490 500 510 520 530 540 pj0026 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK 460 470 480 490 500 510 550 560 570 580 590 600 pj0026 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE 520 530 540 550 560 570 610 620 630 640 650 660 pj0026 SATGVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR 580 590 600 610 620 630 670 680 690 700 710 720 pj0026 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL 640 650 660 670 680 690 730 740 750 760 770 780 pj0026 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL 700 710 720 730 740 750 790 800 810 820 830 840 pj0026 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE 760 770 780 790 800 810 850 860 870 880 890 900 pj0026 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG 820 830 840 850 860 870 910 920 930 940 950 960 pj0026 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP 880 890 900 910 920 930 970 980 990 1000 1010 1020 pj0026 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 pj0026 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 pj0026 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 pj0026 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 pj0026 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 pj0026 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 pj0026 RWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS 1300 1310 1320 1330 1340 1350 1390 1400 1410 pj0026 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET ::::::::::::::::::::::::::::::::::: gi|119 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET 1360 1370 1380 1390 >>gi|24430139|ref|NP_056355.2| RNA polymerase II associa (1393 aa) initn: 9276 init1: 9276 opt: 9276 Z-score: 10015.6 bits: 1865.7 E(): 0 Smith-Waterman score: 9276; 99.856% identity (99.928% similar) in 1393 aa overlap (23-1415:1-1393) 10 20 30 40 50 60 pj0026 EGTPTRRHCWRESYWGGSWSSKMLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR :::::::::::::::::::::::::::::::::::::: gi|244 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR 10 20 30 70 80 90 100 110 120 pj0026 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH 40 50 60 70 80 90 130 140 150 160 170 180 pj0026 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA 100 110 120 130 140 150 190 200 210 220 230 240 pj0026 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ 160 170 180 190 200 210 250 260 270 280 290 300 pj0026 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE 220 230 240 250 260 270 310 320 330 340 350 360 pj0026 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH 280 290 300 310 320 330 370 380 390 400 410 420 pj0026 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL 340 350 360 370 380 390 430 440 450 460 470 480 pj0026 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV 400 410 420 430 440 450 490 500 510 520 530 540 pj0026 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK 460 470 480 490 500 510 550 560 570 580 590 600 pj0026 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE 520 530 540 550 560 570 610 620 630 640 650 660 pj0026 SATGVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 SATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR 580 590 600 610 620 630 670 680 690 700 710 720 pj0026 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL 640 650 660 670 680 690 730 740 750 760 770 780 pj0026 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL 700 710 720 730 740 750 790 800 810 820 830 840 pj0026 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE 760 770 780 790 800 810 850 860 870 880 890 900 pj0026 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 DWLQDMQRLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG 820 830 840 850 860 870 910 920 930 940 950 960 pj0026 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP 880 890 900 910 920 930 970 980 990 1000 1010 1020 pj0026 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 pj0026 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 pj0026 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 pj0026 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 pj0026 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 pj0026 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 pj0026 RWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 RWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS 1300 1310 1320 1330 1340 1350 1390 1400 1410 pj0026 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET ::::::::::::::::::::::::::::::::::: gi|244 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET 1360 1370 1380 1390 >>gi|74733434|sp|Q9BWH6.2|RPAP1_HUMAN RecName: Full=RNA (1393 aa) initn: 9275 init1: 9275 opt: 9275 Z-score: 10014.5 bits: 1865.5 E(): 0 Smith-Waterman score: 9275; 99.856% identity (99.928% similar) in 1393 aa overlap (23-1415:1-1393) 10 20 30 40 50 60 pj0026 EGTPTRRHCWRESYWGGSWSSKMLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR :::::::::::::::::::::::::::::::::::::: gi|747 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR 10 20 30 70 80 90 100 110 120 pj0026 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH 40 50 60 70 80 90 130 140 150 160 170 180 pj0026 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA 100 110 120 130 140 150 190 200 210 220 230 240 pj0026 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ 160 170 180 190 200 210 250 260 270 280 290 300 pj0026 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE 220 230 240 250 260 270 310 320 330 340 350 360 pj0026 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH 280 290 300 310 320 330 370 380 390 400 410 420 pj0026 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL 340 350 360 370 380 390 430 440 450 460 470 480 pj0026 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV 400 410 420 430 440 450 490 500 510 520 530 540 pj0026 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|747 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDKDEECPAGKAKRK 460 470 480 490 500 510 550 560 570 580 590 600 pj0026 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE 520 530 540 550 560 570 610 620 630 640 650 660 pj0026 SATGVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 SATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR 580 590 600 610 620 630 670 680 690 700 710 720 pj0026 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL 640 650 660 670 680 690 730 740 750 760 770 780 pj0026 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL 700 710 720 730 740 750 790 800 810 820 830 840 pj0026 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE 760 770 780 790 800 810 850 860 870 880 890 900 pj0026 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG 820 830 840 850 860 870 910 920 930 940 950 960 pj0026 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP 880 890 900 910 920 930 970 980 990 1000 1010 1020 pj0026 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 pj0026 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 pj0026 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 pj0026 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 pj0026 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 pj0026 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 pj0026 RWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 RWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS 1300 1310 1320 1330 1340 1350 1390 1400 1410 pj0026 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET ::::::::::::::::::::::::::::::::::: gi|747 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET 1360 1370 1380 1390 >>gi|114656478|ref|XP_510325.2| PREDICTED: RNA polymeras (1393 aa) initn: 9228 init1: 9228 opt: 9228 Z-score: 9963.7 bits: 1856.1 E(): 0 Smith-Waterman score: 9228; 99.426% identity (99.713% similar) in 1393 aa overlap (23-1415:1-1393) 10 20 30 40 50 60 pj0026 EGTPTRRHCWRESYWGGSWSSKMLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR :::::::::::::::::::::::::::::::::::::: gi|114 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR 10 20 30 70 80 90 100 110 120 pj0026 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH 40 50 60 70 80 90 130 140 150 160 170 180 pj0026 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA 100 110 120 130 140 150 190 200 210 220 230 240 pj0026 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ 160 170 180 190 200 210 250 260 270 280 290 300 pj0026 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|114 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSRTQEQTGETASE 220 230 240 250 260 270 310 320 330 340 350 360 pj0026 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|114 EQRPGGPSANVTKEEPLMSAFASEPRKGDKLEPEAPALALPVTPQKEWLHMDTVELEKLH 280 290 300 310 320 330 370 380 390 400 410 420 pj0026 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|114 WTQDLPPVRRQQTQERMQARFSLQGELLAPDADLPTHLGLHHHGEEAERAGYSLQELFHL 340 350 360 370 380 390 430 440 450 460 470 480 pj0026 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV 400 410 420 430 440 450 490 500 510 520 530 540 pj0026 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|114 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGNAKRK 460 470 480 490 500 510 550 560 570 580 590 600 pj0026 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE 520 530 540 550 560 570 610 620 630 640 650 660 pj0026 SATGVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR 580 590 600 610 620 630 670 680 690 700 710 720 pj0026 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|114 LLSSFDLRSRLCRFIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL 640 650 660 670 680 690 730 740 750 760 770 780 pj0026 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL 700 710 720 730 740 750 790 800 810 820 830 840 pj0026 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE 760 770 780 790 800 810 850 860 870 880 890 900 pj0026 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG 820 830 840 850 860 870 910 920 930 940 950 960 pj0026 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP 880 890 900 910 920 930 970 980 990 1000 1010 1020 pj0026 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 pj0026 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 pj0026 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|114 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPMEPLLPTDWPFLPLIRLYHRASDTPS 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 pj0026 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 pj0026 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: gi|114 VAALLAQLCQPQVLPNLNLDCPLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 pj0026 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 pj0026 RWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS 1300 1310 1320 1330 1340 1350 1390 1400 1410 pj0026 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET ::::::::::::::::::::::::::::::::::: gi|114 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET 1360 1370 1380 1390 >>gi|109080733|ref|XP_001101155.1| PREDICTED: similar to (1393 aa) initn: 8881 init1: 8881 opt: 8881 Z-score: 9588.7 bits: 1786.7 E(): 0 Smith-Waterman score: 8881; 95.908% identity (98.277% similar) in 1393 aa overlap (23-1415:1-1393) 10 20 30 40 50 60 pj0026 EGTPTRRHCWRESYWGGSWSSKMLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR :::::::::::.:::.:::::::::::::::::::::: gi|109 MLSRPKPGESEMDLLRFQSQFLAAGAAPAVQLVKKGNR 10 20 30 70 80 90 100 110 120 pj0026 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH ::.::::::: ::::::::::::::::::::::::::::: :: : :::::::::.:::: gi|109 GGSDANSDRPTLQDHRDVVMLDNLPDLPPALVPSPPKRARSSPCHPLPEDEDPEEKLRRH 40 50 60 70 80 90 130 140 150 160 170 180 pj0026 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA :::::::::::::::::::.::::.:::::::::: :::::::::::::::::::::::: gi|109 DQHITAVLTKIIERDTSSVTVNLPMPSGVAFPAVFHRSRDTQGKSATSGKRSIFAQEIAA 100 110 120 130 140 150 190 200 210 220 230 240 pj0026 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ ::::::. :::::::::.:::::::::::::::.:::::::::::::::::::::::::: gi|109 RRIAEARVPSVGEVVPNLGPPEGAVTCETPTPRDQGCQLPGSSHSFQGPNLVTGKGLRDQ 160 170 180 190 200 210 250 260 270 280 290 300 pj0026 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE ::::::::::::::::::::::::::::::::::::::::::::::::.::::::: ::: gi|109 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSRTQEQTGEKASE 220 230 240 250 260 270 310 320 330 340 350 360 pj0026 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH ::::::::::::::.:::::::::::: :::::::::::::.:::::::::::::::::: gi|109 EQRPGGPSANVTKEKPLMSAFASEPRKGDKLEPEAPALALPMTPQKEWLHMDTVELEKLH 280 290 300 310 320 330 370 380 390 400 410 420 pj0026 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 WTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL 340 350 360 370 380 390 430 440 450 460 470 480 pj0026 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV 400 410 420 430 440 450 490 500 510 520 530 540 pj0026 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK ::.::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|109 IAAAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAEKAKRK 460 470 480 490 500 510 550 560 570 580 590 600 pj0026 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|109 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYLLEVTYPGPAVVLDILAVLIRLARHSLE 520 530 540 550 560 570 610 620 630 640 650 660 pj0026 SATGVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR ::: ::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|109 SATRVLECPRLIETIVREFLPTSWSPLGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR 580 590 600 610 620 630 670 680 690 700 710 720 pj0026 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL :::::::::::::.:::::::::::::::: ::::::::::::::::::: ::::::::: gi|109 LLSSFDLRSRLCRFIAEAPQELALPPEEAETLSTEALRLWAVAASYGQGGDLYRELYPVL 640 650 660 670 680 690 730 740 750 760 770 780 pj0026 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL ::::::::.::::::::::::::::.::::::::::::::::::.::::::::::::::: gi|109 MRALQVVPQELSTHPPQPLSMQRIAALLTLLTQLTLAAGSTPAEAISDSAEASLSATPSL 700 710 720 730 740 750 790 800 810 820 830 840 pj0026 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE 760 770 780 790 800 810 850 860 870 880 890 900 pj0026 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG ::::::::::::::::::::::::.::::::::: :::::::.:: :::::::::::::: gi|109 DWLQDMERLSEELLLPLLSQPTLGGLWDSLRHCSPLCNPLSCAPAPEAPPSLVSLGCSGG 820 830 840 850 860 870 910 920 930 940 950 960 pj0026 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 CPSLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP 880 890 900 910 920 930 970 980 990 1000 1010 1020 pj0026 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT ::::::::::::::::::::::::::::::: ::: ::::.::::::::::::::::.:. gi|109 HLTPFSAWALRHEYHLQYLALALAQKAAALQLLPAPHAALHHGMALALLSRLLPGSEHLA 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 pj0026 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC ::::::::::::.:::::::::::::::::::::::.:: ::::::::::::::::::.: gi|109 HELLLSCVFRLELLPERTSGGPEAADFSDQLSLGSSKVPWCGQGTLLAQACQDLPSIRSC 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 pj0026 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS ::::: ::::::::::::::::::::::::::.: ::::::::::::::.:::::::::: gi|109 YLTHCLPARASLLASQALHRGELQRVPTLLLPVPMEPLLPTDWPFLPLIHLYHRASDTPS 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 pj0026 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL :::: ::.:::: :::::::::::::::::::::::::::::::::::::::::: :::: gi|109 GLSPMDTVGTAMWVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESRVQHL 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 pj0026 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR ::::::::::::.:::::::: :::::::::::::::::::::::::::::::::::::: gi|109 VAALLAQLCQPQILPNLNLDCPLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 pj0026 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 pj0026 RWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 HWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS 1300 1310 1320 1330 1340 1350 1390 1400 1410 pj0026 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET ::::::::::::::::::::::::::::::::::: gi|109 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET 1360 1370 1380 1390 >>gi|119612909|gb|EAW92503.1| RNA polymerase II associat (1315 aa) initn: 8484 init1: 8427 opt: 8427 Z-score: 9098.5 bits: 1695.9 E(): 0 Smith-Waterman score: 8427; 99.842% identity (99.921% similar) in 1266 aa overlap (23-1288:1-1266) 10 20 30 40 50 60 pj0026 EGTPTRRHCWRESYWGGSWSSKMLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR :::::::::::::::::::::::::::::::::::::: gi|119 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR 10 20 30 70 80 90 100 110 120 pj0026 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH 40 50 60 70 80 90 130 140 150 160 170 180 pj0026 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA 100 110 120 130 140 150 190 200 210 220 230 240 pj0026 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ 160 170 180 190 200 210 250 260 270 280 290 300 pj0026 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE 220 230 240 250 260 270 310 320 330 340 350 360 pj0026 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH 280 290 300 310 320 330 370 380 390 400 410 420 pj0026 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL 340 350 360 370 380 390 430 440 450 460 470 480 pj0026 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV 400 410 420 430 440 450 490 500 510 520 530 540 pj0026 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK 460 470 480 490 500 510 550 560 570 580 590 600 pj0026 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE 520 530 540 550 560 570 610 620 630 640 650 660 pj0026 SATGVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR 580 590 600 610 620 630 670 680 690 700 710 720 pj0026 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL 640 650 660 670 680 690 730 740 750 760 770 780 pj0026 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL 700 710 720 730 740 750 790 800 810 820 830 840 pj0026 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE 760 770 780 790 800 810 850 860 870 880 890 900 pj0026 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG 820 830 840 850 860 870 910 920 930 940 950 960 pj0026 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP 880 890 900 910 920 930 970 980 990 1000 1010 1020 pj0026 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 pj0026 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 pj0026 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 pj0026 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 pj0026 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 pj0026 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP :::::::::::::::::::::::::::. gi|119 RFSVTLRLALFGEHVGALRALSLPLTQVLSQPSRTCKGTLHWASGAVLSLEELWKTSASS 1240 1250 1260 1270 1280 1290 >>gi|158261471|dbj|BAF82913.1| unnamed protein product [ (1195 aa) initn: 7957 init1: 7957 opt: 7957 Z-score: 8591.1 bits: 1601.9 E(): 0 Smith-Waterman score: 7957; 99.833% identity (99.916% similar) in 1195 aa overlap (23-1217:1-1195) 10 20 30 40 50 60 pj0026 EGTPTRRHCWRESYWGGSWSSKMLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR :::::::::::::::::::::::::::::::::::::: gi|158 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR 10 20 30 70 80 90 100 110 120 pj0026 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH 40 50 60 70 80 90 130 140 150 160 170 180 pj0026 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA 100 110 120 130 140 150 190 200 210 220 230 240 pj0026 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ 160 170 180 190 200 210 250 260 270 280 290 300 pj0026 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE 220 230 240 250 260 270 310 320 330 340 350 360 pj0026 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH 280 290 300 310 320 330 370 380 390 400 410 420 pj0026 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL 340 350 360 370 380 390 430 440 450 460 470 480 pj0026 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV 400 410 420 430 440 450 490 500 510 520 530 540 pj0026 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|158 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDKDEECPAGKAKRK 460 470 480 490 500 510 550 560 570 580 590 600 pj0026 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE 520 530 540 550 560 570 610 620 630 640 650 660 pj0026 SATGVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 SATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR 580 590 600 610 620 630 670 680 690 700 710 720 pj0026 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL 640 650 660 670 680 690 730 740 750 760 770 780 pj0026 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL 700 710 720 730 740 750 790 800 810 820 830 840 pj0026 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE 760 770 780 790 800 810 850 860 870 880 890 900 pj0026 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG 820 830 840 850 860 870 910 920 930 940 950 960 pj0026 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP 880 890 900 910 920 930 970 980 990 1000 1010 1020 pj0026 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 pj0026 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 pj0026 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 pj0026 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 pj0026 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR ::::::::::::::::: gi|158 VAALLAQLCQPQVLPNL 1180 1190 >>gi|149692044|ref|XP_001503457.1| PREDICTED: similar to (1393 aa) initn: 7932 init1: 7932 opt: 7932 Z-score: 8563.2 bits: 1597.0 E(): 0 Smith-Waterman score: 7932; 86.073% identity (94.257% similar) in 1393 aa overlap (23-1415:1-1393) 10 20 30 40 50 60 pj0026 EGTPTRRHCWRESYWGGSWSSKMLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR :::::::::::.:::.::.:::::::::::::::::.: gi|149 MLSRPKPGESELDLLRFQNQFLAAGAAPAVQLVKKGSR 10 20 30 70 80 90 100 110 120 pj0026 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH ::.: .. :::::::::::::::::::::::.:::::::::: .:: ::::::: :: gi|149 RDGDTNPNQTPLQDHRDVVMLDNLPDLPPALVPAPPKRARPSPGCPVPEHEDPEERLNRH 40 50 60 70 80 90 130 140 150 160 170 180 pj0026 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA ::::::::::::::::::.:::::.::::::: :: ::. :::.::::::::::::::: gi|149 DQHITAVLTKIIERDTSSAAVNLPLPSGVAFPPVFHRSQGRQGKAATSGKRSIFAQEIAA 100 110 120 130 140 150 190 200 210 220 230 240 pj0026 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ ::..::. :.: ::: . ::::::: :. :::.:: ::: .: :::::.:::::::: : gi|149 RRVSEARVPAVREVVSILDPPEGAVTSEALTPREQGNQLPCGSSSFQGPHLVTGKGLRGQ 160 170 180 190 200 210 250 260 270 280 290 300 pj0026 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE :::::::::::::.::::::::::::::::::::::::::::::::.: :..:.: :.: gi|149 EAEQEAQTIHEENVARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSRSSTHKQAGGKAAE 220 230 240 250 260 270 310 320 330 340 350 360 pj0026 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH ::::::::..:: :::.. : :.:::..:.::: :::::::.::.::::::::::::::: gi|149 EQRPGGPSVEVTGEEPIVPAPATEPRQEDELEPGAPALALPMTPHKEWLHMDTVELEKLH 280 290 300 310 320 330 370 380 390 400 410 420 pj0026 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 WTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL 340 350 360 370 380 390 430 440 450 460 470 480 pj0026 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV :::::::::.::::::::::::::::::::.:.:::: :::::::::::::::::::::: gi|149 TRSQVSQQRGLALHVLAQVISRAQAGEFGDQLVGSVLHLLLDAGFLFLLRFSLDDRVDGV 400 410 420 430 440 450 490 500 510 520 530 540 pj0026 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK ::.:.:::::::::::::::::::::::::::.:::::::::::::::::: :: ::::: gi|149 IAAAVRALRALLVAPGDEELLDSTFSWYHGALVFPLMPSQEDKEDEDEDEEPPAEKAKRK 460 470 480 490 500 510 550 560 570 580 590 600 pj0026 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE .::: .::: ::::::::::::::.:::::::::::: :::.:::::::::::::::::: gi|149 NPEEGNRPPSDLARHDVIKGLLATNLLPRLRYVLEVTCPGPSVVLDILAVLIRLARHSLE 520 530 540 550 560 570 610 620 630 640 650 660 pj0026 SATGVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR ::: ::::::::::.:::::::::::::.::::::.:::::::::::::::::::::::: gi|149 SATRVLECPRLIETVVREFLPTSWSPVGVGPTPSLHKVPCATAMKLLRVLASAGRNIAAR 580 590 600 610 620 630 670 680 690 700 710 720 pj0026 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL ::.:::::::: :.::: ::::::::::::::: ::.::::::::::::. ::::::::: gi|149 LLNSFDLRSRLRRFIAEPPQELALPPEEAEMLSMEAFRLWAVAASYGQGSDLYRELYPVL 640 650 660 670 680 690 730 740 750 760 770 780 pj0026 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL :.:::.::.::..: :.:::::::::::.:::::::::..: : :: ::::::::::: gi|149 MQALQAVPKELNVHSPRPLSMQRIASLLSLLTQLTLAASNTAPEPSSDPAEASLSATPSL 700 710 720 730 740 750 790 800 810 820 830 840 pj0026 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE . ::.::::: ::::::::::::: ::::: :.: ::.:::::: ::::::::::: :: gi|149 IIWTEVSGLQLLVEPCLRQTLKLLPRPEMWSALGLVPTACLLFLDAYYQAWSQQPSLCPG 760 770 780 790 800 810 850 860 870 880 890 900 pj0026 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG ::::::::::::::::::.::::::::::: .::::::::::.:. :. :::::::.:: gi|149 DWLQDMERLSEELLLPLLNQPTLGSLWDSLGRCSLLCNPLSCAPTPETLSSLVSLGCTGG 820 830 840 850 860 870 910 920 930 940 950 960 pj0026 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP : :::::::::::::::::::.::::.:::::::::::::::::::::::::.:: ::: gi|149 RPALSLAGSASPFPFLTALLSLFNTLARIHKGLCGQLAAILAAPGLQNYFLQCAAPVAAP 880 890 900 910 920 930 970 980 990 1000 1010 1020 pj0026 HLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLT ::::::::::::: :::::::.:::.::.:::. ::.:::.::::::::::::::::.:. gi|149 HLTPFSAWALRHECHLQYLALTLAQRAATLQPMAATNAALHHGMALALLSRLLPGSEHLA 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 pj0026 HELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNC :::::::::::::::: .:::::::::::.::: :.: : : .:. :::::::: :::.: gi|149 HELLLSCVFRLEFLPEGASGGPEAADFSDRLSLRSGRDPGCERGAQLAQACQDLSSIRSC 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 pj0026 YLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPS :::::: ::::::::::..::::::.:.::::.: ::::::::::::::.:::::::::: gi|149 YLTHCSLARASLLASQAVYRGELQRIPALLLPVPKEPLLPTDWPFLPLIHLYHRASDTPS 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 pj0026 GLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHL :: :.::.:::::.::::::::::::::::::::::::::::::::::::::::.:::.: gi|149 GLPPADTVGTAMRALQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRETPVQRL 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 pj0026 VAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQR :::::::::::.:::.::::: ::::.::::::::::.:::::::::::::::::::::: gi|149 VAALLAQLCQPEVLPTLNLDCPLPGLASFPDLYANFLEHFEAVSFGDHLFGALVLLPLQR 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 pj0026 RFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRP :::::::::::::::::::::.:::::::::::::: ::::::::::::::.:::::::: gi|149 RFSVTLRLALFGEHVGALRALGLPLTQLPVSLECYTGPPEDNLALLQLYFRALVTGALRP 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 pj0026 RWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS ::::::::::::::::::::::.:::.:::::::::::::::::::::::::::::::: gi|149 CWCPVLYAVAVAHVNSFIFSQDPKSSDDVKAARRSMLQKTWLLADEGLRQHLLHYKLPNS 1300 1310 1320 1330 1340 1350 1390 1400 1410 pj0026 TLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET .:::::::: :::::::.::::::: .:::: ::: gi|149 ALPEGFELYPQLPPLRQQYLQRLTSGMLQNGGSET 1360 1370 1380 1390 >>gi|74000205|ref|XP_544632.2| PREDICTED: similar to RNA (1394 aa) initn: 5000 init1: 5000 opt: 7774 Z-score: 8392.4 bits: 1565.4 E(): 0 Smith-Waterman score: 7774; 84.279% identity (93.467% similar) in 1393 aa overlap (23-1414:1-1393) 10 20 30 40 50 60 pj0026 EGTPTRRHCWRESYWGGSWSSKMLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR :::::::::::::::.:::::::::::::::::::::: gi|740 MLSRPKPGESEVDLLRFQSQFLAAGAAPAVQLVKKGNR 10 20 30 70 80 90 100 110 120 pj0026 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH :::.: :.: :::::::: :::::: ::::::.: :::::::: ::: ::::::: :: gi|740 RGGDTNLDQPLLQDHRDVVTLDNLPDSPPALVPAPSKRARPSPGCLLPEHEDPEERLNRH 40 50 60 70 80 90 130 140 150 160 170 180 pj0026 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA :::::::::::::::::::.:::::::::::: :: ::.. ::.:: ::::::::::::: gi|740 DQHITAVLTKIIERDTSSVTVNLPVPSGVAFPPVFHRSQERQGRSAISGKRSIFAQEIAA 100 110 120 130 140 150 190 200 210 220 230 240 pj0026 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ .: .::: : : ::: .. ::::::. :. .::.:::::: .: .::::.::::::::.: gi|740 KRASEAKVPPVREVVSSLDPPEGAVSYEALAPREQGCQLPWGSPGFQGPHLVTGKGLRSQ 160 170 180 190 200 210 250 260 270 280 290 300 pj0026 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE .::::::::::::::.::::::::::::::::::::::::::::::.:::.::.:: :.: gi|740 DAEQEAQTIHEENIAKLQAMAPEEILQEQQRLLAQLDPSLVAFLRSRSHTHEQAGEKATE 220 230 240 250 260 270 310 320 330 340 350 360 pj0026 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH :::::: :..:: :: .. :.:::..: :.::::::::::.:.:::.::::::::::: gi|740 EQRPGGHSVEVTGEELIVPISAKEPRQEDDLDPEAPALALPVNPHKEWVHMDTVELEKLH 280 290 300 310 320 330 370 380 390 400 410 420 pj0026 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL :::::::.:::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|740 WTQDLPPLRRQRTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL 340 350 360 370 380 390 430 440 450 460 470 480 pj0026 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV ::::::::::::::::::::::::::::::::.:::. :::::::::::::::::::::: gi|740 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLVGSVFRLLLDAGFLFLLRFSLDDRVDGV 400 410 420 430 440 450 490 500 510 520 530 pj0026 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKED-EDEDEECPAGKAKR ::.:.:::::::::::::::::.:::::::::.:::::::::::: :::::: :: :::: gi|740 IAAAVRALRALLVAPGDEELLDTTFSWYHGALVFPLMPSQEDKEDDEDEDEEPPAEKAKR 460 470 480 490 500 510 540 550 560 570 580 590 pj0026 KSPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSL ::::. ..:: ::::.:::::::::.:::::::::::: :.:.::::::::::::::::: gi|740 KSPEKGNQPPSDLARRDVIKGLLATNLLPRLRYVLEVTCPAPSVVLDILAVLIRLARHSL 520 530 540 550 560 570 600 610 620 630 640 650 pj0026 ESATGVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAA :::: ::::::::::.:::::::.:::::.::.::::::::::::::::::::::::::: gi|740 ESATRVLECPRLIETVVREFLPTNWSPVGVGPAPSLYKVPCATAMKLLRVLASAGRNIAA 580 590 600 610 620 630 660 670 680 690 700 710 pj0026 RLLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPV ::::.:::::::::.:::::::.:: ::::::.:::..::::::::::::: :::::::: gi|740 RLLSGFDLRSRLCRFIAEAPQEMALLPEEAEMMSTESFRLWAVAASYGQGGDLYRELYPV 640 650 660 670 680 690 720 730 740 750 760 770 pj0026 LMRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPS :::::: ::.::::.::::::.:::::::::::.:::::.:: : :: :::::::::: gi|740 LMRALQSVPEELSTQPPQPLSVQRIASLLTLLTRLTLAASSTAPEPSSDCAEASLSATPS 700 710 720 730 740 750 780 790 800 810 820 830 pj0026 LVTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCP .::::::::::::: ::::::::: :::::.:.::::.:::::: ::::::::::. :: gi|740 SITWTQVSGLQPLVELCLRQTLKLLPRPEMWHALGPVPTACLLFLDAYYQAWSQQPNLCP 760 770 780 790 800 810 840 850 860 870 880 890 pj0026 EDWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSG ::::::::::::.:::::: :.:::::::: :: :::: :.:: :: ::::::: .: gi|740 EDWLQDMERLSEDLLLPLLRTPSLGSLWDSLGCCSPLCNPQFCAPAPEAVPSLVSLGSAG 820 830 840 850 860 870 900 910 920 930 940 950 pj0026 GCPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAA : : : : :::::::::::::::.::::.:::::: :::..::.::::::::::.:: :: gi|740 GRPSLWLPGSASPFPFLTALLSLFNTLARIHKGLCDQLATVLATPGLQNYFLQCLAPVAA 880 890 900 910 920 930 960 970 980 990 1000 1010 pj0026 PHLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYL : :::::::::::::::::::: :::..:..:: . .:::.:.:.::::::::::::.: gi|740 PFLTPFSAWALRHEYHLQYLALILAQRVATVQPALVINAALHHSMVLALLSRLLPGSEHL 940 950 960 970 980 990 1020 1030 1040 1050 1060 1070 pj0026 THELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRN .:::::::::::::::::.::: :::::::.::::::. ::.:.:::::::::::::. gi|740 AHELLLSCVFRLEFLPERASGGLEAADFSDRLSLGSSKDSGCGRGVLLAQACQDLPSIRS 1000 1010 1020 1030 1040 1050 1080 1090 1100 1110 1120 1130 pj0026 CYLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTP ::.::: :::::::::: .:::: .: :::::.: ::::::::::::::.:::.::::: gi|740 CYVTHCPLARASLLASQAWYRGELWQVQTLLLPVPKEPLLPTDWPFLPLIHLYHQASDTP 1060 1070 1080 1090 1100 1110 1140 1150 1160 1170 1180 1190 pj0026 SGLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQH ::: :.::..::.:.::::::::::::::::::::::::::::::::::.:::::.:.:: gi|740 SGLPPADTISTALRALQWVLVLESWRPQALWAVPPAARLARLMCVFLVDGELFRETPIQH 1120 1130 1140 1150 1160 1170 1200 1210 1220 1230 1240 1250 pj0026 LVAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQ :::::::.::::.:::.: ::: ::::.::::::::::.::::::.:::::::::::::: gi|740 LVAALLARLCQPKVLPDLRLDCPLPGLASFPDLYANFLEHFEAVSYGDHLFGALVLLPLQ 1180 1190 1200 1210 1220 1230 1260 1270 1280 1290 1300 1310 pj0026 RRFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALR ::::::::::::::::::::::.:::::::::::::: ::::::.::::::::::::.: gi|740 RRFSVTLRLALFGEHVGALRALGLPLTQLPVSLECYTEPPEDNLVLLQLYFRTLVTGVLC 1240 1250 1260 1270 1280 1290 1320 1330 1340 1350 1360 1370 pj0026 PRWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPN ::::::::::::::::::::::::.:::::::::::.::::::::::::::::::::::: gi|740 PRWCPVLYAVAVAHVNSFIFSQDPKSSDEVKAARRSLLQKTWLLADEGLRQHLLHYKLPN 1300 1310 1320 1330 1340 1350 1380 1390 1400 1410 pj0026 STLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET :.:::::::: :::::::.::::::: .::::.:: gi|740 SALPEGFELYPQLPPLRQQYLQRLTSGMLQNGLSEA 1360 1370 1380 1390 >>gi|145566939|sp|A0JN53.1|RPAP1_BOVIN RecName: Full=RNA (1395 aa) initn: 7654 init1: 5208 opt: 7662 Z-score: 8271.4 bits: 1543.0 E(): 0 Smith-Waterman score: 7662; 83.369% identity (92.401% similar) in 1395 aa overlap (23-1415:1-1395) 10 20 30 40 50 60 pj0026 EGTPTRRHCWRESYWGGSWSSKMLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNR :::::::::::::::.::::::::::.:::::::::.: gi|145 MLSRPKPGESEVDLLRFQSQFLAAGATPAVQLVKKGSR 10 20 30 70 80 90 100 110 120 pj0026 GGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRH .:::: ..:::::::::::::.::::::::::.::::::::::: ::: :::::::.:: gi|145 RAGDANLEQPPLQDHRDVVMLDSLPDLPPALVPAPPKRARPSPGHLLPEHEDPEERLHRH 40 50 60 70 80 90 130 140 150 160 170 180 pj0026 DQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAA ::::::::::::::::::. ::::: :::::: :: ::. ::: .:.:::::::::::: gi|145 DQHITAVLTKIIERDTSSMPVNLPVSSGVAFPPVFHRSQGRQGKPVTAGKRSIFAQEIAA 100 110 120 130 140 150 190 200 210 220 230 240 pj0026 RRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ :: . :: : :: . :::.:.:::. :::. : : : .:.:::::.:::::::. : gi|145 RRASGAKVSPVREVESILDPPESAMTCEALTPREWGSQPPWNSYSFQGPHLVTGKGLKGQ 160 170 180 190 200 210 250 260 270 280 290 300 pj0026 EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASE :::::::::::::.:::::.::::::::::::::::::::::::.::: :.::. : :.. gi|145 EAEQEAQTIHEENVARLQALAPEEILQEQQRLLAQLDPSLVAFLKSHSCTREQAEEKATR 220 230 240 250 260 270 310 320 330 340 350 360 pj0026 EQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLH ::::: :::.: .: . . :: ::....::::.::::::::::::::::::::::::: gi|145 EQRPGRPSAEVIGKEAIAPTSASVPRQENELEPETPALALPVTPQKEWLHMDTVELEKLH 280 290 300 310 320 330 370 380 390 400 410 420 pj0026 WTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHL :::::::.:::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|145 WTQDLPPLRRQQTQERMQARFSLQGELLAPDMDLPTHLGLHHHGEEAERAGYSLQELFHL 340 350 360 370 380 390 430 440 450 460 470 480 pj0026 TRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGV ::::::::::::::::::::.:::::::::::.:::: :::::::::::::::::::::: gi|145 TRSQVSQQRALALHVLAQVIGRAQAGEFGDRLVGSVLHLLLDAGFLFLLRFSLDDRVDGV 400 410 420 430 440 450 490 500 510 520 530 540 pj0026 IATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK ::.:.::::::::::::::::::::::::::: : :::::::::::::::: :: ::: : gi|145 IAAAVRALRALLVAPGDEELLDSTFSWYHGALMFALMPSQEDKEDEDEDEEPPAEKAKTK 460 470 480 490 500 510 550 560 570 580 590 600 pj0026 SPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLE :::: .::: ::::::.:::::::.:::::::::::: :::.::::::.::::::::::: gi|145 SPEEGNRPPSDLARHDIIKGLLATNLLPRLRYVLEVTCPGPSVVLDILTVLIRLARHSLE 520 530 540 550 560 570 610 620 630 640 650 660 pj0026 SATGVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAAR ::: :::::::.::.:::::::::::.:.::: ::..:::: :::::::::::.:::::: gi|145 SATRVLECPRLVETVVREFLPTSWSPMGSGPTSSLHRVPCAPAMKLLRVLASASRNIAAR 580 590 600 610 620 630 670 680 690 700 710 720 pj0026 LLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVL :::.::::::: :.::: ::.:::: :::: :::::.:::::::::: :. ::::::::: gi|145 LLSGFDLRSRLSRFIAEDPQDLALPLEEAETLSTEAFRLWAVAASYGLGSDLYRELYPVL 640 650 660 670 680 690 730 740 750 760 770 780 pj0026 MRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSL :.::: ::.:::. ::.::..:::::::::::::::::: : : :::::: : : gi|145 MQALQDVPKELSSPPPRPLAVQRIASLLTLLTQLTLAAGHIAPEHNSHSAEASLLAGSSS 700 710 720 730 740 750 790 800 810 820 830 840 pj0026 VTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPE :::::::::::::::::::::::: ::::: :.::::.:::::: ::::::::::. ::: gi|145 VTWTQVSGLQPLVEPCLRQTLKLLPRPEMWSALGPVPTACLLFLDAYYQAWSQQPGLCPE 760 770 780 790 800 810 850 860 870 880 890 900 pj0026 DWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGG ::::::::::: ::::::..:.:::::::: :: :::: ::. : :. ::.::::.:: gi|145 DWLQDMERLSEGLLLPLLKHPSLGSLWDSLGCCSPLCNPQSCAVAPETISSLASLGCAGG 820 830 840 850 860 870 910 920 930 940 950 960 pj0026 CPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAP : :::::::::::::::::::::::..::::::::::..:::::::.:::.:::: :: gi|145 HPPLSLAGSASPFPFLTALLSLLNTLGRIHKGLCGQLATVLAAPGLQDYFLRCVAPVAAL 880 890 900 910 920 930 970 980 990 1000 1010 pj0026 HLTPFSAWALRHEYHLQYLALALAQKAAALQP-LPATHAALYHGMALALLSRLLPGSEYL :::::::::::::::::::::.:::.::.::: . .: ::: ::::::::.:::::::.: gi|145 HLTPFSAWALRHEYHLQYLALTLAQRAATLQPPMSGTDAALCHGMALALLGRLLPGSEHL 940 950 960 970 980 990 1020 1030 1040 1050 1060 1070 pj0026 THELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRN .:::.:::::::::::::.:::::::::::.:::::. ::.:.:::::::::::::. gi|145 AHELMLSCVFRLEFLPERASGGPEAADFSDRLSLGSGGDLGCGRGALLAQACQDLPSIRS 1000 1010 1020 1030 1040 1050 1080 1090 1100 1110 1120 1130 pj0026 CYLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTP ::::::: :::::::::::.::::::::.::::.: ::::::::::::::.::::::::: gi|145 CYLTHCSLARASLLASQALYRGELQRVPALLLPVPKEPLLPTDWPFLPLIQLYHRASDTP 1060 1070 1080 1090 1100 1110 1140 1150 1160 1170 1180 1190 pj0026 SGLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQH ::: :.::.:::.:.::::::::::::.::::: :::::::::::::::::::::.:.:. gi|145 SGLPPADTVGTALRALQWVLVLESWRPRALWAVSPAARLARLMCVFLVDSELFRETPIQR 1120 1130 1140 1150 1160 1170 1200 1210 1220 1230 1240 1250 pj0026 LVAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQ :::::::.::::.:: :::::: :::::::::::::::.:::::::::::::::.::::: gi|145 LVAALLARLCQPEVLSNLNLDCPLPGLTSFPDLYANFLEHFEAVSFGDHLFGALILLPLQ 1180 1190 1200 1210 1220 1230 1260 1270 1280 1290 1300 1310 pj0026 RRFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALR ::::::::::::::::::::::.::::::::::::::.::::::::::::::.::::::: gi|145 RRFSVTLRLALFGEHVGALRALGLPLTQLPVSLECYTAPPEDNLALLQLYFRALVTGALR 1240 1250 1260 1270 1280 1290 1320 1330 1340 1350 1360 1370 pj0026 PRWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPN ::::::::::::::::::::::::..:::.::: ::::::::::.::::::::::::::: gi|145 PRWCPVLYAVAVAHVNSFIFSQDPNNSDEIKAACRSMLQKTWLLTDEGLRQHLLHYKLPN 1300 1310 1320 1330 1340 1350 1380 1390 1400 1410 pj0026 STLPEGFELYSQLPPLRQHYLQRLT-STVLQNGVSET :.:::::::: :::::::.:::.: : :: ::::.: gi|145 SALPEGFELYPQLPPLRQQYLQKLRISGVLPNGVSDT 1360 1370 1380 1390 1415 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Thu Jun 18 17:26:16 2009 done: Thu Jun 18 17:29:29 2009 Total Scan time: 1638.730 Total Display time: 1.210 Function used was FASTA [version 34.26.5 April 26, 2007]