hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20100311/iprscan-20100311-18050313/chunk_1/iprscan-20100311-18050313.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj00440 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 208.6 1.3e-59 6 PF00023.20.fs Ankyrin repeat 196.6 5.4e-56 6 PF00856.18.ls SET domain 189.7 6.5e-54 1 PF00856.18.fs SET domain 188.2 1.8e-53 1 PF05033.6.fs Pre-SET motif 154.8 3.6e-47 1 PF05033.6.ls Pre-SET motif 156.7 5.8e-44 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/6 498 530 .. 1 33 [] 41.0 1.9e-10 PF00023.20.ls 1/6 498 530 .. 1 33 [] 43.0 9.3e-10 PF00023.20.ls 2/6 531 563 .. 1 33 [] 24.5 0.00036 PF00023.20.fs 2/6 531 563 .. 1 33 [] 22.5 2.8e-05 PF00023.20.ls 3/6 564 597 .. 1 33 [] 37.9 3.2e-08 PF00023.20.fs 3/6 564 597 .. 1 33 [] 35.9 4.9e-09 PF00023.20.ls 4/6 598 630 .. 1 33 [] 39.3 1.3e-08 PF00023.20.fs 4/6 598 630 .. 1 33 [] 37.3 2.1e-09 PF00023.20.ls 5/6 638 670 .. 1 33 [] 23.4 0.00075 PF00023.20.fs 5/6 638 670 .. 1 33 [] 21.4 5.5e-05 PF00023.20.ls 6/6 671 703 .. 1 33 [] 40.5 5.3e-09 PF00023.20.fs 6/6 671 703 .. 1 33 [] 38.5 9.3e-10 PF05033.6.ls 1/1 746 851 .. 1 123 [] 156.7 5.8e-44 PF05033.6.fs 1/1 746 851 .. 1 123 [] 154.8 3.6e-47 PF00856.18.ls 1/1 853 983 .. 1 259 [] 189.7 6.5e-54 PF00856.18.fs 1/1 853 983 .. 1 259 [] 188.2 1.8e-53 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 6, from 498 to 530: score 41.0, E = 1.9e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPLH Aa++g++e++ Ll++GA++na+d+ pj00440 498 SKRTPLHAAAQKGSVEICHVLLQAGANINAVDK 530 PF00023.20.ls: domain 1 of 6, from 498 to 530: score 43.0, E = 9.3e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPLH Aa++g++e++ Ll++GA++na+d+ pj00440 498 SKRTPLHAAAQKGSVEICHVLLQAGANINAVDK 530 PF00023.20.ls: domain 2 of 6, from 531 to 563: score 24.5, E = 0.00036 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPL+ A+ +++lev+++ +++G ++ + pj00440 531 QQRTPLMEAVVNNHLEVARYMVQRGGCVYSKEE 563 PF00023.20.fs: domain 2 of 6, from 531 to 563: score 22.5, E = 2.8e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPL+ A+ +++lev+++ +++G ++ + pj00440 531 QQRTPLMEAVVNNHLEVARYMVQRGGCVYSKEE 563 PF00023.20.ls: domain 3 of 6, from 564 to 597: score 37.9, E = 3.2e-08 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* dG T+LH+Aa+ gnle+v+lLls+ d+naqd pj00440 564 DGSTCLHHAAKIGNLEMVSLLLStGQVDVNAQDS 597 PF00023.20.fs: domain 3 of 6, from 564 to 597: score 35.9, E = 4.9e-09 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* dG T+LH+Aa+ gnle+v+lLls+ d+naqd pj00440 564 DGSTCLHHAAKIGNLEMVSLLLStGQVDVNAQDS 597 PF00023.20.ls: domain 4 of 6, from 598 to 630: score 39.3, E = 1.3e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TP+ +Aa++ ++ev+++Ll +GAd+ ++d+ pj00440 598 GGWTPIIWAAEHKHIEVIRMLLTRGADVTLTDN 630 PF00023.20.fs: domain 4 of 6, from 598 to 630: score 37.3, E = 2.1e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TP+ +Aa++ ++ev+++Ll +GAd+ ++d+ pj00440 598 GGWTPIIWAAEHKHIEVIRMLLTRGADVTLTDN 630 PF00023.20.ls: domain 5 of 6, from 638 to 670: score 23.4, E = 0.00075 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + + +LH+A++ g++ +++ Ll++ +dl+a++ pj00440 638 EENICLHWASFTGSAAIAEVLLNARCDLHAVNY 670 PF00023.20.fs: domain 5 of 6, from 638 to 670: score 21.4, E = 5.5e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + + +LH+A++ g++ +++ Ll++ +dl+a++ pj00440 638 EENICLHWASFTGSAAIAEVLLNARCDLHAVNY 670 PF00023.20.ls: domain 6 of 6, from 671 to 703: score 40.5, E = 5.3e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH+Aa+ ++++v l+ls+GA++ ++++ pj00440 671 HGDTPLHIAARESYHDCVLLFLSRGANPELRNK 703 PF00023.20.fs: domain 6 of 6, from 671 to 703: score 38.5, E = 9.3e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH+Aa+ ++++v l+ls+GA++ ++++ pj00440 671 HGDTPLHIAARESYHDCVLLFLSRGANPELRNK 703 PF05033.6.ls: domain 1 of 1, from 746 to 851: score 156.7, E = 5.8e-44 *->DisrgkEsvpIplvENeVDldkpiPedFtYIneyiygegvipiqseW D++rg+E+vpIp+v N VD++++ Ped++YI+e++ +++++i+++ pj00440 746 DVARGYENVPIPCV-NGVDGEPC-PEDYKYISENCE-TSTMNIDRN- 788 WSleftsGCeCtddlsCspdsskCaCgrlsgnggaypPglvfpneeydnd ++++++C C+d +Cs ss+C+Cg+ls++++ yd+d pj00440 789 --ITHLQHCTCVD--DCS--SSNCLCGQLSIRCW------------YDKD 820 gilve.....pgpvIYECNsrCkCgpsCkNR<-* g+l+++ ++ ++p+I+ECN++C+C+++CkNR pj00440 821 GRLLQefnkiEPPLIFECNQACSCWRNCKNR 851 PF05033.6.fs: domain 1 of 1, from 746 to 851: score 154.8, E = 3.6e-47 *->DisrgkEsvpIplvENeVDldkpiPedFtYIneyiygegvipiqseW D++rg+E+vpIp+v N VD++++ Ped++YI+e++ +++++i+++ pj00440 746 DVARGYENVPIPCV-NGVDGEPC-PEDYKYISENCE-TSTMNIDRN- 788 WSleftsGCeCtddlsCspdsskCaCgrlsgnggaypPglvfpneeydnd ++++++C C+d +Cs ss+C+Cg+ls++++ yd+d pj00440 789 --ITHLQHCTCVD--DCS--SSNCLCGQLSIRCW------------YDKD 820 gilve.....pgpvIYECNsrCkCgpsCkNR<-* g+l+++ ++ ++p+I+ECN++C+C+++CkNR pj00440 821 GRLLQefnkiEPPLIFECNQACSCWRNCKNR 851 PF00856.18.ls: domain 1 of 1, from 853 to 983: score 189.7, E = 6.5e-54 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae vq g+++rl++++t + GwG+ra++ Ip G+fi+EY+Geli+++ea+ pj00440 853 VQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEAD 899 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy redd+ Ylfdld+ pj00440 900 VREDDS----------------YLFDLDN--------------------- 912 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee pj00440 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF ++g+ ++iDA+ +GNi+RF pj00440 913 ------------------------------KDGE-VYCIDARYYGNISRF 931 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL iNH C+PN ++vf+ ++d+ ++pri++f+ rdI+ GeEL pj00440 932 INHLCDPNIIPVRVFMLHQDL----------RFPRIAFFSSRDIRTGEEL 971 tydYgydksnge<-* +dYg+ ++ + pj00440 972 GFDYGDRFWDIK 983 PF00856.18.fs: domain 1 of 1, from 853 to 983: score 188.2, E = 1.8e-53 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae vq g+++rl++++t + GwG+ra++ Ip G+fi+EY+Geli+++ea+ pj00440 853 VQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEAD 899 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy redd+ Ylfdld+ pj00440 900 VREDDS----------------YLFDLDN--------------------- 912 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee pj00440 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF ++g+ ++iDA+ +GNi+RF pj00440 913 ------------------------------KDGE-VYCIDARYYGNISRF 931 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL iNH C+PN ++vf+ ++d+ ++pri++f+ rdI+ GeEL pj00440 932 INHLCDPNIIPVRVFMLHQDL----------RFPRIAFFSSRDIRTGEEL 971 tydYgydksnge<-* +dYg+ ++ + pj00440 972 GFDYGDRFWDIK 983 //