hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20100311/iprscan-20100311-18050313/chunk_1/iprscan-20100311-18050313.nocrc
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Query sequence: pj00440
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 184.5    9.8e-51   6
SM00317                                                 168.4    7.2e-46   1
SM00468                                                 149.5    3.4e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/6     498   527 ..     1    30 []    36.2  4.4e-06
SM00248    2/6     531   560 ..     1    30 []    25.4   0.0081
SM00248    3/6     564   594 ..     1    30 []    35.3  8.1e-06
SM00248    4/6     598   627 ..     1    30 []    35.9  5.3e-06
SM00248    5/6     638   667 ..     1    30 []    18.1      1.3
SM00248    6/6     671   700 ..     1    30 []    33.6  2.7e-05
SM00468    1/1     744   843 ..     1   124 []   149.5  3.4e-40
SM00317    1/1     859   982 ..     1   114 []   168.4  7.2e-46

Alignments of top-scoring domains:
SM00248: domain 1 of 6, from 498 to 527: score 36.2, E = 4.4e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                        rTpLH Aa++g++e+++ Ll++ga+ina   
     pj00440   498    SKRTPLHAAAQKGSVEICHVLLQAGANINA    527  

SM00248: domain 2 of 6, from 531 to 560: score 25.4, E = 0.0081
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + rTpL+ A+ n++lev+++++++g+ ++    
     pj00440   531    QQRTPLMEAVVNNHLEVARYMVQRGGCVYS    560  

SM00248: domain 3 of 6, from 564 to 594: score 35.3, E = 8.1e-06
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      dG T+LH+Aa+ gnle+v lLl+ g  d+na   
     pj00440   564    DGSTCLHHAAKIGNLEMVSLLLSTGQvDVNA    594  

SM00248: domain 4 of 6, from 598 to 627: score 35.9, E = 5.3e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+Tp+ +Aae++++ev+++Ll +gad+++   
     pj00440   598    GGWTPIIWAAEHKHIEVIRMLLTRGADVTL    627  

SM00248: domain 5 of 6, from 638 to 667: score 18.1, E = 1.3
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + + +LH+A  +g+  +++ Ll++  d++a   
     pj00440   638    EENICLHWASFTGSAAIAEVLLNARCDLHA    667  

SM00248: domain 6 of 6, from 671 to 700: score 33.6, E = 2.7e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+TpLH+Aa++ ++++v l+l++ga++++   
     pj00440   671    HGDTPLHIAARESYHDCVLLFLSRGANPEL    700  

SM00468: domain 1 of 1, from 744 to 843: score 149.5, E = 3.4e-40
                   *->llDisnGkEnvPvplVeNevDedppplPpdFeYiserivgqgvvdIl
                      ++D+++G+EnvP+p+V N vD++p+  P+d++Yise++ +++++   
     pj00440   744    CRDVARGYENVPIPCV-NGVDGEPC--PEDYKYISENCETSTMN--- 784  

                   idrspsplsgCsCvdledCsssnmskCeCarknieggefaYkelrldkee
                   idr+ ++l++C+Cvd  dCsssn   C+C +++  ++++++k++      
     pj00440   785 IDRNITHLQHCTCVD--DCSSSN---CLCGQLS--IRCWYDKDG------ 821  

                   ekkverlngglllkakpvIYECNsrCs<-*
                        rl +++++ ++p+I+ECN++Cs   
     pj00440   822 -----RLLQEFNKIEPPLIFECNQACS    843  

SM00317: domain 1 of 1, from 859 to 982: score 168.4, E = 7.2e-46
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii...........f
                      ++l+++++ + GwG+ra++ Ip G+fI+eyvGe+i++ + + +++++
     pj00440   859    VRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELIsdaeadvreddS 905  

                   ylfd.........ciDatranggkGniarfiNHSCePNcelifvevdgfd
                   ylfd ++++++  ciDa++    +Gni+rfiNH C+PN+  ++v++ ++d
     pj00440   906 YLFDldnkdgevyCIDARY----YGNISRFINHLCDPNIIPVRVFMLHQD 951  

                   prgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                   +r      +pri++f+ rdI+ GEEL +dYgd +++    
     pj00440   952 LR------FPRIAFFSSRDIRTGEELGFDYGDRFWDI    982  

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