hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-12504909/chunk_1/iprscan-20080813-12504909.nocrc
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Query sequence: pj00488
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.fs Leucine Rich Repeat                             18.7    0.00045   2
PF00560.23.ls Leucine Rich Repeat                             22.5     0.0014   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   1/2      82   103 ..     1    24 []    10.6      2.8
PF00560.23.ls   2/2     105   127 ..     1    24 []    11.9      1.5

Alignments of top-scoring domains:
PF00560.23.ls: domain 1 of 2, from 82 to 103: score 10.6, E = 2.8
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L+ L L++ N  l  s+p++l  l   
     pj00488    82    SLRLLVLHS-N-LLA-SVPADLaRL    103  

PF00560.23.ls: domain 2 of 2, from 105 to 127: score 11.9, E = 1.5
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L+ LdL++ N +l ++lp++ l+     
     pj00488   105    LLTRLDLRD-N-QL-RDLPPElLdAP    127  

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