hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-12504909/chunk_1/iprscan-20080813-12504909.nocrc
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Query sequence: pj00488
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  37.6    1.7e-06   2
SM00218                                                  -1.9     0.0096   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/2      80   102 ..     1    24 []    11.6       16
SM00369     2/2     103   126 ..     1    24 []    26.0   0.0053
SM00218     1/1     161   261 ..     1   115 []    -1.9   0.0096

Alignments of top-scoring domains:
SM00369: domain 1 of 2, from 80 to 102: score 11.6, E = 16
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++Lr L L++N L s+P+++ +    
     pj00488    80    LRSLRLLVLHSNLLASVPADL-AR    102  

SM00369: domain 2 of 2, from 103 to 126: score 26.0, E = 0.0053
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp L++LdL +NqL+ LPp++++    
     pj00488   103    LPLLTRLDLRDNQLRDLPPELLDA    126  

SM00218: domain 1 of 1, from 161 to 261: score -1.9, E = 0.0096
                   *->psflvsgtvdsrGGrLrgprHsGvrliiPpgAipqGtryecYlvvhk
                      +s l s+ v  rG + ++    Gvrl  P+gA +  t +++++++  
     pj00488   161    TSDLDSFPVTPRGCSVTLAC--GVRLQFPAGATA--TPITIRYRLLL 203  

                   klstpPPLDkeegEtLLSPvvecGPCDVSmSAhGalllrPViLevpHCAs
                   ++  + PL   +  +LLS v+e+ P       hG+ +   V L +  + +
     pj00488   204 PEPGLVPL--GPHDALLSHVLELQP-------HGVAFQQDVGLWLL-FTP 243  

                   lrprdkwelvllrsengg<-*
                   + +r  +e v+ +  + +   
     pj00488   244 PQARRCREVVVRTRNDNS    261  

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