hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-12565531/chunk_1/iprscan-20080813-12565531.nocrc
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Query sequence: pj00587
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     78.1    3.9e-21   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     80.0    6.8e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1     222   293 ..     1    74 []    78.1  3.9e-21
PF00076.12.ls   1/1     222   293 ..     1    74 []    80.0  6.8e-21

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 222 to 293: score 78.1, E = 3.9e-21
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+  Lp++  +++L + F +fG ++s+k++ D  r+t++sk f+FV
     pj00587   222    LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVD--RATNQSKCFGFV 266  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+++ +A+ A++a+nG+++g ++l+v   
     pj00587   267 SFDNPTSAQTAIQAMNGFQIGMKRLKV    293  

PF00076.12.ls: domain 1 of 1, from 222 to 293: score 80.0, E = 6.8e-21
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+  Lp++  +++L + F +fG ++s+k++ D  r+t++sk f+FV
     pj00587   222    LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVD--RATNQSKCFGFV 266  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+++ +A+ A++a+nG+++g ++l+v   
     pj00587   267 SFDNPTSAQTAIQAMNGFQIGMKRLKV    293  

//