hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-12565531/chunk_1/iprscan-20080813-12565531.nocrc
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Query sequence: pj00587
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                  88.4    8.8e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/1     221   294 ..     1   121 []    88.4  8.8e-22

Alignments of top-scoring domains:
SM00360: domain 1 of 1, from 221 to 294: score 88.4, E = 8.8e-22
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lf+  L  p +  + +L + F               +fG vvs+++
     pj00587   221    NLFIYHL--PQEFGDAELIQTF--------------LPFGAVVSAKV 251  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + d+                      T++sk+f+FV F+++ +A+ A  i
     pj00587   252 FVDRA---------------------TNQSKCFGFVSFDNPTSAQTA--I 278  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a+n   G+++  g ++   l+V+   
     pj00587   279 QAMN---GFQI--GMKR---LKVQ    294  

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