# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Opj00587.fasta.nr -Q pj00587.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 pj00587, 305 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6832865 sequences Expectation_n fit: rho(ln(x))= 6.3533+/-0.000195; mu= 5.2314+/- 0.011 mean_var=114.3297+/-22.455, 0's: 37 Z-trim: 79 B-trim: 99 in 1/66 Lambda= 0.119948 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088448|dbj|BAD92671.1| BRUNO-like 6 RNA-bindi ( 305) 2069 368.2 9.3e-100 gi|194381648|dbj|BAG58778.1| unnamed protein produ ( 454) 1713 306.7 4.4e-81 gi|194377382|dbj|BAG57639.1| unnamed protein produ ( 344) 1550 278.4 1.1e-72 gi|26329793|dbj|BAC28635.1| unnamed protein produc ( 345) 1491 268.2 1.3e-69 gi|81912009|sp|Q7TN33|CELF6_MOUSE CUG-BP- and ETR- ( 460) 1491 268.3 1.6e-69 gi|148694025|gb|EDL25972.1| bruno-like 6, RNA bind ( 465) 1491 268.3 1.7e-69 gi|149041860|gb|EDL95701.1| bruno-like 6, RNA bind ( 459) 1484 267.1 3.8e-69 gi|148694026|gb|EDL25973.1| bruno-like 6, RNA bind ( 459) 1481 266.6 5.4e-69 gi|73981464|ref|XP_862411.1| PREDICTED: similar to ( 419) 1138 207.2 3.7e-51 gi|119598306|gb|EAW77900.1| bruno-like 6, RNA bind ( 342) 1101 200.7 2.7e-49 gi|34194499|gb|AAH33838.1| BRUNOL6 protein [Homo s ( 368) 1101 200.7 2.9e-49 gi|34526541|dbj|BAC85148.1| FLJ00324 protein [Homo ( 376) 1101 200.7 2.9e-49 gi|74760888|sp|Q96J87|CELF6_HUMAN CUG-BP- and ETR- ( 481) 1101 200.8 3.5e-49 gi|21410087|gb|AAH30835.1| Bruno-like 6, RNA bindi ( 481) 1101 200.8 3.5e-49 gi|109081773|ref|XP_001092705.1| PREDICTED: simila ( 481) 1092 199.3 1e-48 gi|194670473|ref|XP_585599.4| PREDICTED: similar t ( 481) 1084 197.9 2.7e-48 gi|119621801|gb|EAX01396.1| bruno-like 4, RNA bind ( 328) 919 169.2 8e-40 gi|75075903|sp|Q4R535|CELF4_MACFA CUG-BP- and ETR- ( 474) 919 169.3 1.1e-39 gi|30931371|gb|AAH52744.1| Bruno-like 4, RNA bindi ( 485) 919 169.3 1.1e-39 gi|148664597|gb|EDK97013.1| bruno-like 4, RNA bind ( 491) 919 169.3 1.1e-39 gi|26339326|dbj|BAC33334.1| unnamed protein produc ( 484) 913 168.3 2.2e-39 gi|33872777|gb|AAH04167.2| Bruno-like 4, RNA bindi ( 484) 911 167.9 2.8e-39 gi|118103587|ref|XP_001231325.1| PREDICTED: simila ( 483) 900 166.0 1e-38 gi|12642588|gb|AAK00298.1|AF314173_1 BRUL4 [Mus mu ( 298) 891 164.3 2.1e-38 gi|145306682|gb|ABP57105.1| CUG-BP and ETR-3-like ( 351) 887 163.7 3.9e-38 gi|123914769|sp|Q0V9L3|CELF4_XENTR CUG-BP- and ETR ( 424) 880 162.5 1e-37 gi|73981446|ref|XP_862170.1| PREDICTED: similar to ( 412) 873 161.3 2.4e-37 gi|55960555|emb|CAI17167.1| trinucleotide repeat c ( 415) 862 159.4 8.9e-37 gi|194212448|ref|XP_001916316.1| PREDICTED: simila ( 356) 850 157.3 3.3e-36 gi|126313732|ref|XP_001366746.1| PREDICTED: simila ( 424) 781 145.4 1.5e-32 gi|73981468|ref|XP_862464.1| PREDICTED: similar to ( 424) 777 144.7 2.4e-32 gi|148706792|gb|EDL38739.1| trinucleotide repeat c ( 447) 708 132.8 9.9e-29 gi|149017097|gb|EDL76148.1| bruno-like 4, RNA bind ( 329) 684 128.5 1.4e-27 gi|73961233|ref|XP_866509.1| PREDICTED: similar to ( 334) 684 128.5 1.4e-27 gi|28279033|gb|AAH45711.1| BRUNOL4 protein [Homo s ( 448) 684 128.6 1.8e-27 gi|148878073|gb|AAI46143.1| BRUNOL4 protein [Bos t ( 475) 684 128.7 1.8e-27 gi|109122035|ref|XP_001106276.1| PREDICTED: simila ( 479) 684 128.7 1.9e-27 gi|148664594|gb|EDK97010.1| bruno-like 4, RNA bind ( 485) 684 128.7 1.9e-27 gi|152013395|sp|Q5NVC8.2|CELF4_PONAB CUG-BP- and E ( 486) 684 128.7 1.9e-27 gi|152013394|sp|Q7TSY6|CELF4_MOUSE CUG-BP- and ETR ( 486) 684 128.7 1.9e-27 gi|73961237|ref|XP_852916.1| PREDICTED: similar to ( 488) 684 128.7 1.9e-27 gi|194379036|dbj|BAG58069.1| unnamed protein produ ( 454) 683 128.5 2e-27 gi|148664595|gb|EDK97011.1| bruno-like 4, RNA bind ( 463) 683 128.5 2e-27 gi|55732010|emb|CAH92712.1| hypothetical protein [ ( 457) 681 128.1 2.6e-27 gi|56403901|emb|CAI29735.1| hypothetical protein [ ( 486) 675 127.1 5.5e-27 gi|55730138|emb|CAH91793.1| hypothetical protein [ ( 456) 670 126.2 9.6e-27 gi|187761301|ref|NP_001020259.1| bruno-like 4, RNA ( 484) 670 126.2 1e-26 gi|187761299|ref|NP_001020258.1| bruno-like 4, RNA ( 485) 670 126.2 1e-26 gi|62089134|dbj|BAD93011.1| bruno-like 4, RNA bind ( 510) 670 126.3 1e-26 gi|26341974|dbj|BAC34649.1| unnamed protein produc ( 456) 669 126.1 1.1e-26 >>gi|62088448|dbj|BAD92671.1| BRUNO-like 6 RNA-binding p (305 aa) initn: 2069 init1: 2069 opt: 2069 Z-score: 1946.1 bits: 368.2 E(): 9.3e-100 Smith-Waterman score: 2069; 100.000% identity (100.000% similar) in 305 aa overlap (1-305:1-305) 10 20 30 40 50 60 pj0058 SQLPVRAEERTESCLWGCWASSRVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SQLPVRAEERTESCLWGCWASSRVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVV 10 20 30 40 50 60 70 80 90 100 110 120 pj0058 KLADTDRERALRRMQQMAGHLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KLADTDRERALRRMQQMAGHLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPV 70 80 90 100 110 120 130 140 150 160 170 180 pj0058 AAVAAQMQHVAAFSLVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AAVAAQMQHVAAFSLVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQP 130 140 150 160 170 180 190 200 210 220 230 240 pj0058 GSDTLYNNGLSPYPAQSPGVADPLQQAYAGMHHYAGPEGCNLFIYHLPQEFGDAELIQTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GSDTLYNNGLSPYPAQSPGVADPLQQAYAGMHHYAGPEGCNLFIYHLPQEFGDAELIQTF 190 200 210 220 230 240 250 260 270 280 290 300 pj0058 LPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKD 250 260 270 280 290 300 pj0058 ANRPY ::::: gi|620 ANRPY >>gi|194381648|dbj|BAG58778.1| unnamed protein product [ (454 aa) initn: 1713 init1: 1713 opt: 1713 Z-score: 1610.8 bits: 306.7 E(): 4.4e-81 Smith-Waterman score: 1713; 100.000% identity (100.000% similar) in 253 aa overlap (53-305:202-454) 30 40 50 60 70 80 pj0058 RVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVVKLADTDRERALRRMQQMAGHLG :::::::::::::::::::::::::::::: gi|194 TSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGHLG 180 190 200 210 220 230 90 100 110 120 130 140 pj0058 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP 240 250 260 270 280 290 150 160 170 180 190 200 pj0058 AAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVAD 300 310 320 330 340 350 210 220 230 240 250 260 pj0058 PLQQAYAGMHHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 PLQQAYAGMHHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC 360 370 380 390 400 410 270 280 290 300 pj0058 FGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY ::::::::::::::::::::::::::::::::::::::::::: gi|194 FGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 420 430 440 450 >>gi|194377382|dbj|BAG57639.1| unnamed protein product [ (344 aa) initn: 1204 init1: 612 opt: 1550 Z-score: 1460.0 bits: 278.4 E(): 1.1e-72 Smith-Waterman score: 1550; 90.734% identity (93.822% similar) in 259 aa overlap (53-305:87-344) 30 40 50 60 70 80 pj0058 RVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVVKLADTDRERALRRMQQMAGHLG :::::::::::::::::::::::::::::: gi|194 TSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGHLG 60 70 80 90 100 110 90 100 110 120 130 140 pj0058 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP 120 130 140 150 160 170 150 160 170 180 190 200 pj0058 AAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVAD ::: ::::::::::::::::::::::::::::::::::::::::::::::::: :.. gi|194 AAA-NSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAAYPSAYA 180 190 200 210 220 230 210 220 230 240 250 pj0058 PLQQAYAGM------HHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA :.. :. . .. ::::::::::::::::::::::::::::::::::::::::: gi|194 PVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 240 250 260 270 280 290 260 270 280 290 300 pj0058 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY ::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 300 310 320 330 340 >>gi|26329793|dbj|BAC28635.1| unnamed protein product [M (345 aa) initn: 1501 init1: 903 opt: 1491 Z-score: 1404.8 bits: 268.2 E(): 1.3e-69 Smith-Waterman score: 1491; 86.873% identity (92.664% similar) in 259 aa overlap (53-305:87-345) 30 40 50 60 70 80 pj0058 RVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVVKLADTDRERALRRMQQMAGHLG :::::::::::::::::::::::::::.:: gi|263 TSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRRMQQMAGQLG 60 70 80 90 100 110 90 100 110 120 130 140 pj0058 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|263 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGQVAAVAAQMQHVAAFSLVAAPLLP 120 130 140 150 160 170 150 160 170 180 190 200 pj0058 AAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVAD ::: .:: :.:::.:::::::.:::::: ::::.:::::::::::::.::::: :.. gi|263 AAANTSPGGNGPGALPGLPAPMGVNGFGSLTPQSNGQPGSDTLYNNGVSPYPAAYPSAYA 180 190 200 210 220 230 210 220 230 240 250 pj0058 PLQQAYAGM------HHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA : . :.. . .. ::::::::::::::::::::::::::::::::::::::::: gi|263 PASTAFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 240 250 260 270 280 290 260 270 280 290 300 pj0058 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY ::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 300 310 320 330 340 >>gi|81912009|sp|Q7TN33|CELF6_MOUSE CUG-BP- and ETR-3-li (460 aa) initn: 1501 init1: 903 opt: 1491 Z-score: 1403.1 bits: 268.3 E(): 1.6e-69 Smith-Waterman score: 1491; 86.873% identity (92.664% similar) in 259 aa overlap (53-305:202-460) 30 40 50 60 70 80 pj0058 RVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVVKLADTDRERALRRMQQMAGHLG :::::::::::::::::::::::::::.:: gi|819 TSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRRMQQMAGQLG 180 190 200 210 220 230 90 100 110 120 130 140 pj0058 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|819 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGQVAAVAAQMQHVAAFSLVAAPLLP 240 250 260 270 280 290 150 160 170 180 190 200 pj0058 AAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVAD ::: .:: :.:::.:::::::.:::::: ::::.:::::::::::::.::::: :.. gi|819 AAANTSPGGNGPGALPGLPAPMGVNGFGSLTPQSNGQPGSDTLYNNGVSPYPAAYPSAYA 300 310 320 330 340 350 210 220 230 240 250 pj0058 PLQQAYAGM------HHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA : . :.. . .. ::::::::::::::::::::::::::::::::::::::::: gi|819 PASTAFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 360 370 380 390 400 410 260 270 280 290 300 pj0058 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY ::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 420 430 440 450 460 >>gi|148694025|gb|EDL25972.1| bruno-like 6, RNA binding (465 aa) initn: 1501 init1: 903 opt: 1491 Z-score: 1403.0 bits: 268.3 E(): 1.7e-69 Smith-Waterman score: 1491; 86.873% identity (92.664% similar) in 259 aa overlap (53-305:207-465) 30 40 50 60 70 80 pj0058 RVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVVKLADTDRERALRRMQQMAGHLG :::::::::::::::::::::::::::.:: gi|148 TSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRRMQQMAGQLG 180 190 200 210 220 230 90 100 110 120 130 140 pj0058 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|148 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGQVAAVAAQMQHVAAFSLVAAPLLP 240 250 260 270 280 290 150 160 170 180 190 200 pj0058 AAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVAD ::: .:: :.:::.:::::::.:::::: ::::.:::::::::::::.::::: :.. gi|148 AAANTSPGGNGPGALPGLPAPMGVNGFGSLTPQSNGQPGSDTLYNNGVSPYPAAYPSAYA 300 310 320 330 340 350 210 220 230 240 250 pj0058 PLQQAYAGM------HHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA : . :.. . .. ::::::::::::::::::::::::::::::::::::::::: gi|148 PASTAFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 360 370 380 390 400 410 260 270 280 290 300 pj0058 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY ::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 420 430 440 450 460 >>gi|149041860|gb|EDL95701.1| bruno-like 6, RNA binding (459 aa) initn: 1515 init1: 884 opt: 1484 Z-score: 1396.6 bits: 267.1 E(): 3.8e-69 Smith-Waterman score: 1484; 87.209% identity (91.860% similar) in 258 aa overlap (53-305:202-459) 30 40 50 60 70 80 pj0058 RVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVVKLADTDRERALRRMQQMAGHLG :::::::::::::::::::::::::::.:: gi|149 TSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRRMQQMAGQLG 180 190 200 210 220 230 90 100 110 120 130 140 pj0058 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|149 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGQVAAVAAQMQHVAAFSLVAAPLLP 240 250 260 270 280 290 150 160 170 180 190 200 pj0058 AAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVAD ::: .:: :.:::.:::::::.:::::: :.::::::::::.::::::::::: . : gi|149 AAANTSPSGNGPGALPGLPAPMGVNGFGSLNPQTNGQPGSDSLYNNGLSPYPAYPSAYAP 300 310 320 330 340 350 210 220 230 240 250 pj0058 -----PLQQAYAGMHHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRAT : : . ... :::::::::::::::::::::::::::::::::::::::::: gi|149 VSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRAT 360 370 380 390 400 410 260 270 280 290 300 pj0058 NQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY :::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 420 430 440 450 >>gi|148694026|gb|EDL25973.1| bruno-like 6, RNA binding (459 aa) initn: 1542 init1: 884 opt: 1481 Z-score: 1393.8 bits: 266.6 E(): 5.4e-69 Smith-Waterman score: 1481; 86.873% identity (92.664% similar) in 259 aa overlap (53-305:202-459) 30 40 50 60 70 80 pj0058 RVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVVKLADTDRERALRRMQQMAGHLG :::::::::::::::::::::::::::.:: gi|148 TSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRRMQQMAGQLG 180 190 200 210 220 230 90 100 110 120 130 140 pj0058 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|148 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGQVAAVAAQMQHVAAFSLVAAPLLP 240 250 260 270 280 290 150 160 170 180 190 200 pj0058 AAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVAD ::: .:: :.:::.:::::::.:::::: ::::.:::::::::::::.::::: :.. gi|148 AAANTSPGGNGPGALPGLPAPMGVNGFGSLTPQSNGQPGSDTLYNNGVSPYPAY-PSAYA 300 310 320 330 340 350 210 220 230 240 250 pj0058 PLQQAYAGM------HHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA : . :.. . .. ::::::::::::::::::::::::::::::::::::::::: gi|148 PASTAFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 360 370 380 390 400 410 260 270 280 290 300 pj0058 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY ::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 420 430 440 450 >>gi|73981464|ref|XP_862411.1| PREDICTED: similar to tri (419 aa) initn: 940 init1: 646 opt: 1138 Z-score: 1073.5 bits: 207.2 E(): 3.7e-51 Smith-Waterman score: 1138; 65.504% identity (87.597% similar) in 258 aa overlap (53-305:163-419) 30 40 50 60 70 80 pj0058 RVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVVKLADTDRERALRRMQQMAGHLG :::::::::.:::..::.::::::.: .:: gi|739 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLG 140 150 160 170 180 190 90 100 110 120 130 pj0058 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAA-QMQHVAAFS---LVAA : : : .:: .::: :..:.::::.:: .. :.:.:..:: ::::.::.. :.:. gi|739 MFSPIALQFGAYSAYTQALMQQQAALVAA-HSAYLSPMATMAAVQMQHMAAINANGLIAT 200 210 220 230 240 250 140 150 160 170 180 190 pj0058 PLLPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSP :. :......::. . . ..:: .::::..:. : .:::. :.:: ::. ::::::: gi|739 PITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSP 260 270 280 290 300 310 200 210 220 230 240 250 pj0058 GV-ADPLQQAYAGMHHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRAT .. .::::::::::.::.::.:::.::::::::: :.:..: :.::: :.:::::::::: gi|739 AAPVDPLQQAYAGMQHYTGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRAT 320 330 340 350 360 370 260 270 280 290 300 pj0058 NQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY ::::::::::::::.:::.::::::::::::::::::::::::::::: gi|739 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 380 390 400 410 >>gi|119598306|gb|EAW77900.1| bruno-like 6, RNA binding (342 aa) initn: 1699 init1: 1101 opt: 1101 Z-score: 1040.1 bits: 200.7 E(): 2.7e-49 Smith-Waterman score: 1649; 90.357% identity (90.357% similar) in 280 aa overlap (53-305:63-342) 30 40 50 60 70 80 pj0058 RVRRTSDACSSPLATSRSARSCGVLTAPVKGASSSLVVKLADTDRERALRRMQQMAGHLG :::::::::::::::::::::::::::::: gi|119 TSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGHLG 40 50 60 70 80 90 90 100 110 120 130 140 pj0058 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLP 100 110 120 130 140 150 150 160 170 180 190 200 pj0058 AAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVAD 160 170 180 190 200 210 210 220 230 pj0058 PLQQAYAGMHHYA---------------------------GPEGCNLFIYHLPQEFGDAE ::::::::::::: :::::::::::::::::::: gi|119 PLQQAYAGMHHYAAAYPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAE 220 230 240 250 260 270 240 250 260 270 280 290 pj0058 LIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQL 280 290 300 310 320 330 300 pj0058 KRPKDANRPY :::::::::: gi|119 KRPKDANRPY 340 305 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 12:54:17 2008 done: Wed Aug 13 12:56:55 2008 Total Scan time: 760.660 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]