hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-13023100/chunk_1/iprscan-20080813-13023100.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj00650 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01417.11.ls ENTH domain 285.1 1.2e-82 1 PF01417.11.fs ENTH domain 283.2 4.5e-82 1 PF02809.10.fs Ubiquitin interaction motif 22.9 8.5e-05 1 PF02809.10.ls Ubiquitin interaction motif 24.9 0.00027 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01417.11.fs 1/1 50 173 .. 1 140 [] 283.2 4.5e-82 PF01417.11.ls 1/1 50 173 .. 1 140 [] 285.1 1.2e-82 PF02809.10.fs 1/1 241 258 .. 1 18 [] 22.9 8.5e-05 PF02809.10.ls 1/1 241 258 .. 1 18 [] 24.9 0.00027 Alignments of top-scoring domains: PF01417.11.fs: domain 1 of 1, from 50 to 173: score 283.2, E = 4.5e-82 *->yseaeikVreATnnDpwGPsgklmaeIaeaTyneklyvefeeimsvL yseaeikVreAT+nDpwGP ++lm+eIa++T+n +v+f+e+m++L pj00650 50 YSEAEIKVREATSNDPWGPPSSLMSEIADLTFN---TVAFTEVMGML 93 wkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfnI w+RLn d + gknWRhVYKaLtlL+YLlk+GSErv+++cren+y +I pj00650 94 WRRLN-D-S--GKNWRHVYKALTLLDYLLKTGSERVAHQCRENLY---TI 136 rtLedFqyVfiDenGkmlrfDqGinVRkKAkelleLLnDderL<-* +tL+dFqy iD++Gk DqG+nVR+K+k++++LL+D+erL pj00650 137 QTLKDFQY--IDRDGK----DQGVNVREKVKQVMALLKDEERL 173 PF01417.11.ls: domain 1 of 1, from 50 to 173: score 285.1, E = 1.2e-82 *->yseaeikVreATnnDpwGPsgklmaeIaeaTyneklyvefeeimsvL yseaeikVreAT+nDpwGP ++lm+eIa++T+n +v+f+e+m++L pj00650 50 YSEAEIKVREATSNDPWGPPSSLMSEIADLTFN---TVAFTEVMGML 93 wkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfnI w+RLn d + gknWRhVYKaLtlL+YLlk+GSErv+++cren+y +I pj00650 94 WRRLN-D-S--GKNWRHVYKALTLLDYLLKTGSERVAHQCRENLY---TI 136 rtLedFqyVfiDenGkmlrfDqGinVRkKAkelleLLnDderL<-* +tL+dFqy iD++Gk DqG+nVR+K+k++++LL+D+erL pj00650 137 QTLKDFQY--IDRDGK----DQGVNVREKVKQVMALLKDEERL 173 PF02809.10.fs: domain 1 of 1, from 241 to 258: score 22.9, E = 8.5e-05 *->mdEEedLqlALalSlqea<-* ++EE +LqlALa+S++ea pj00650 241 GEEELQLQLALAMSREEA 258 PF02809.10.ls: domain 1 of 1, from 241 to 258: score 24.9, E = 0.00027 *->mdEEedLqlALalSlqea<-* ++EE +LqlALa+S++ea pj00650 241 GEEELQLQLALAMSREEA 258 //