hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-17353792/chunk_1/iprscan-20090618-17353792.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj00909s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 438.3 9.7e-129 1 PF07714.7.fs Protein tyrosine kinase 436.4 3.5e-128 1 PF00757.10.fs Furin-like cysteine rich region 352.3 7.3e-103 2 PF00757.10.ls Furin-like cysteine rich region 347.4 2.2e-101 1 PF01030.14.ls Receptor L domain 306.3 5.1e-89 2 PF01030.14.fs Receptor L domain 302.7 6.2e-88 2 PF00069.15.fs Protein kinase domain 126.8 6.8e-36 1 PF00069.15.ls Protein kinase domain 125.7 1.2e-34 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01030.14.fs 1/2 57 168 .. 1 145 [] 149.4 3.2e-43 PF01030.14.ls 1/2 57 168 .. 1 145 [] 151.2 2.6e-42 PF00757.10.fs 1/2 184 338 .. 1 179 [] 345.6 7.9e-101 PF00757.10.ls 1/1 184 338 .. 1 179 [] 347.4 2.2e-101 PF01030.14.ls 2/2 361 481 .. 1 145 [] 155.1 1.6e-43 PF01030.14.fs 2/2 361 481 .. 1 145 [] 153.3 2.3e-44 PF00069.15.fs 1/1 712 909 .. 1 208 [. 126.8 6.8e-36 PF07714.7.fs 1/1 712 968 .. 1 272 [] 436.4 3.5e-128 PF00069.15.ls 1/1 712 968 .. 1 287 [] 125.7 1.2e-34 PF07714.7.ls 1/1 712 968 .. 1 272 [] 438.3 9.7e-129 Alignments of top-scoring domains: PF01030.14.fs: domain 1 of 2, from 57 to 168: score 149.4, E = 3.2e-43 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee nC+v+ GnLeIt++ n dls+L++i+e pj00909s1 57 NCEVVLGNLEITYVQRN-------------------YDLSFLKTIQE 84 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl + Gy+lI+ + v ++L+NL++IrG+ +++ +yal++l+N++ pj00909s1 85 VAGYVLIALN---TVERIPLENLQIIRGNMYYEN----SYALAVLSNYDA 127 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- nk+ GL+eL +++L eI+ G v+++nNp LC++e+ i+w++i+ pj00909s1 128 NKT--GLKELPMRNLQEILH--GAVRFSNNP--ALCNVES-IQWRDIV 168 * pj00909s1 - - PF01030.14.ls: domain 1 of 2, from 57 to 168: score 151.2, E = 2.6e-42 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee nC+v+ GnLeIt++ n dls+L++i+e pj00909s1 57 NCEVVLGNLEITYVQRN-------------------YDLSFLKTIQE 84 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl + Gy+lI+ + v ++L+NL++IrG+ +++ +yal++l+N++ pj00909s1 85 VAGYVLIALN---TVERIPLENLQIIRGNMYYEN----SYALAVLSNYDA 127 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- nk+ GL+eL +++L eI+ G v+++nNp LC++e+ i+w++i+ pj00909s1 128 NKT--GLKELPMRNLQEILH--GAVRFSNNP--ALCNVES-IQWRDIV 168 * pj00909s1 - - PF00757.10.fs: domain 1 of 2, from 184 to 338: score 345.6, E = 7.9e-101 *->greCpkvChGTleakGesCkkttiNGefdyRCWGsgpedCQklTKlv + +C+k C+ +sC++++ CWG+g+e+CQklTK++ pj00909s1 184 LGSCQK-CD-------PSCPNGS--------CWGAGEENCQKLTKII 214 CpsqCsgGrrCtgpnptdCCHeeCaGGCTGHGPkdPtDClACRhFyddGi C++qCsg rC+g+ p+dCCH++Ca+GCT GP++ +DCl+CR+F+d+++ pj00909s1 215 CAQQCSG--RCRGKSPSDCCHNQCAAGCT--GPRE-SDCLVCRKFRDEAT 259 CketCPpptyynedTrqvdfNPegkYqfGasCVkeCPsnylvthnGsCvr Ck+tCPp+++yn++T+q+d+NPegkY+fGa+CVk+CP+ny+vt++GsCvr pj00909s1 260 CKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVR 309 sCPsgHktevgAesGvreCekCReGpCPKvCe<-* +C ++ +e++ e+Gvr+C+kC eGpC+KvC+ pj00909s1 310 ACGAD-SYEME-EDGVRKCKKC-EGPCRKVCN 338 PF00757.10.ls: domain 1 of 1, from 184 to 338: score 347.4, E = 2.2e-101 *->greCpkvChGTleakGesCkkttiNGefdyRCWGsgpedCQklTKlv + +C+k C+ +sC++++ CWG+g+e+CQklTK++ pj00909s1 184 LGSCQK-CD-------PSCPNGS--------CWGAGEENCQKLTKII 214 CpsqCsgGrrCtgpnptdCCHeeCaGGCTGHGPkdPtDClACRhFyddGi C++qCsg rC+g+ p+dCCH++Ca+GCT GP++ +DCl+CR+F+d+++ pj00909s1 215 CAQQCSG--RCRGKSPSDCCHNQCAAGCT--GPRE-SDCLVCRKFRDEAT 259 CketCPpptyynedTrqvdfNPegkYqfGasCVkeCPsnylvthnGsCvr Ck+tCPp+++yn++T+q+d+NPegkY+fGa+CVk+CP+ny+vt++GsCvr pj00909s1 260 CKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVR 309 sCPsgHktevgAesGvreCekCReGpCPKvCe<-* +C ++ +e++ e+Gvr+C+kC eGpC+KvC+ pj00909s1 310 ACGAD-SYEME-EDGVRKCKKC-EGPCRKVCN 338 PF01030.14.ls: domain 2 of 2, from 361 to 481: score 155.1, E = 1.6e-43 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee nCt I G+L+I+++ + gd+ f++++++++ +l L++++e pj00909s1 361 NCTSISGDLHILPVAFRGDS--FTHTPPLDPQ-----ELDILKTVKE 400 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl itG+LlI+ +p n ++l+ ++NL++IrGr+++++ +++l++++ pj00909s1 401 ITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHG----QFSLAVVSLN-- 444 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- +++Lgl+sLkeI++ G+v+i+ N+ +LCy +t i+w++++ pj00909s1 445 ------ITSLGLRSLKEISD--GDVIISGNK--NLCYANT-INWKKLF 481 * pj00909s1 - - PF01030.14.fs: domain 2 of 2, from 361 to 481: score 153.3, E = 2.3e-44 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee nCt I G+L+I+++ + gd+ f++++++++ +l L++++e pj00909s1 361 NCTSISGDLHILPVAFRGDS--FTHTPPLDPQ-----ELDILKTVKE 400 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl itG+LlI+ +p n ++l+ ++NL++IrGr+++++ +++l++++ pj00909s1 401 ITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHG----QFSLAVVSLN-- 444 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- +++Lgl+sLkeI++ G+v+i+ N+ +LCy +t i+w++++ pj00909s1 445 ------ITSLGLRSLKEISD--GDVIISGNK--NLCYANT-INWKKLF 481 * pj00909s1 - - PF00069.15.fs: domain 1 of 1, from 712 to 909: score 126.8, E = 6.8e-36 *->yelleklGsGsfGtVykakhkgtgk....iVAvKiikkr.kekskkd ++++++lGsG+fGtVyk+ ++ +g++ + VA+K+++ ++ k +k+ pj00909s1 712 FKKIKVLGSGAFGTVYKGLWIPEGEkvkiPVAIKELREAtSPKANKE 758 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf + + E++++++++ p+++rl++++ + + l++ +++ G L pj00909s1 759 ILD----EAYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFG----CLL 799 dylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILl dy++ + k ++ + + +++ Qi++g++YL +++ +HRDL N+L+ pj00909s1 800 DYVR--EHKDNI--GSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLV 845 dnngvvdaflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggng + +v Ki+DFGlAk+l +++ ++ + + + +mA E +l ++ pj00909s1 846 KTPQHV----KITDFGLAKLLGaEeKEYhAEGGKVPIKWMALESIL-HRI 890 ygtkvDvWSlGvilyellt<-* y++ +DvWS+Gv+++el+t pj00909s1 891 YTHQSDVWSYGVTVWELMT 909 PF07714.7.fs: domain 1 of 1, from 712 to 968: score 436.4, E = 3.5e-128 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +k++k+LG+GaFG+VykG + ++g++ +i+VA+K L+e +s+++ pj00909s1 712 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELRE-ATSPKA-- 755 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL ++ l EA +M + d+p++ rLlG+c+ + ++t +m+ G+L pj00909s1 756 NKEILDEAYVMASV-DNPHVCRLLGICL--TST----VQLITQLMPFGCL 798 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ld+ r+h ++++ + Ll++++QiAkGM+YLe++++vHRDLAARN+LV+ pj00909s1 799 LDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVK 846 enlvVKIsDFGLaRdi..ynddyYvrkkgggklPvkWmAPEslkygkFts + +VKI+DFGLa++++ ++++y +ggk+P+kWmA+Es+ ++++t+ pj00909s1 847 TPQHVKITDFGLAKLLgaEEKEYH---AEGGKVPIKWMALESILHRIYTH 893 kSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPd +SDVWS+GV+ WE++t+G +P Y g++ +e+ l e+G+RLp+P+ C+ pj00909s1 894 QSDVWSYGVTVWELMTFGSKP-YDGIPASEISSIL-EKGERLPQPPICTI 941 elYdlMlqCWaedPedRPtFselveeL<-* ++Y++M +CW+ d++ RP F+el+ e+ pj00909s1 942 DVYMIMVKCWMIDADSRPKFRELIIEF 968 PF00069.15.ls: domain 1 of 1, from 712 to 968: score 125.7, E = 1.2e-34 *->yelleklGsGsfGtVykakhkgtgk....iVAvKiikkr.kekskkd ++++++lGsG+fGtVyk+ ++ +g++ + VA+K+++ ++ k +k+ pj00909s1 712 FKKIKVLGSGAFGTVYKGLWIPEGEkvkiPVAIKELREAtSPKANKE 758 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf + + E++++++++ p+++rl++++ + + l++ +++ G L pj00909s1 759 ILD----EAYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFG----CLL 799 dylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILl dy++ + k ++ + + +++ Qi++g++YL +++ +HRDL N+L+ pj00909s1 800 DYVR--EHKDNI--GSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLV 845 dnngvvdaflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggng + +v Ki+DFGlAk+l +++ ++ + + + +mA E +l ++ pj00909s1 846 KTPQHV----KITDFGLAKLLGaEeKEYhAEGGKVPIKWMALESIL-HRI 890 ygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefd y++ +DvWS+Gv+++el+t ++ +++++ i ++++ + + pj00909s1 891 YTHQSDVWSYGVTVWELMTFGSKPYDG---IpASEISSILEKGE---RLP 934 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< p ++ + ++ kc+ D +R+ ++e+ f pj00909s1 935 QPPICT-------------IDVYMIMVKCWMIDADSRPKFRELIIE--F 968 -* pj00909s1 - - PF07714.7.ls: domain 1 of 1, from 712 to 968: score 438.3, E = 9.7e-129 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +k++k+LG+GaFG+VykG + ++g++ +i+VA+K L+e +s+++ pj00909s1 712 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELRE-ATSPKA-- 755 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL ++ l EA +M + d+p++ rLlG+c+ + ++t +m+ G+L pj00909s1 756 NKEILDEAYVMASV-DNPHVCRLLGICL--TST----VQLITQLMPFGCL 798 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ld+ r+h ++++ + Ll++++QiAkGM+YLe++++vHRDLAARN+LV+ pj00909s1 799 LDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVK 846 enlvVKIsDFGLaRdi..ynddyYvrkkgggklPvkWmAPEslkygkFts + +VKI+DFGLa++++ ++++y +ggk+P+kWmA+Es+ ++++t+ pj00909s1 847 TPQHVKITDFGLAKLLgaEEKEYH---AEGGKVPIKWMALESILHRIYTH 893 kSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPd +SDVWS+GV+ WE++t+G +P Y g++ +e+ l e+G+RLp+P+ C+ pj00909s1 894 QSDVWSYGVTVWELMTFGSKP-YDGIPASEISSIL-EKGERLPQPPICTI 941 elYdlMlqCWaedPedRPtFselveeL<-* ++Y++M +CW+ d++ RP F+el+ e+ pj00909s1 942 DVYMIMVKCWMIDADSRPKFRELIIEF 968 //