hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17353792/chunk_1/iprscan-20090618-17353792.nocrc
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Query sequence: pj00909s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 443.2   1.4e-128   1
SM00220                                                 158.6    6.3e-43   1
SM00261                                                 118.5    7.4e-31   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00261    1/3     228   270 ..     1    48 []    31.8  9.5e-05
SM00261    2/3     496   547 ..     1    48 []    38.5  8.8e-07
SM00261    3/3     552   601 ..     1    48 []    48.2  1.1e-09
SM00219    1/1     712   968 ..     1   280 []   443.2 1.4e-128
SM00220    1/1     712   969 ..     1   231 []   158.6  6.3e-43

Alignments of top-scoring domains:
SM00261: domain 1 of 3, from 228 to 270: score 31.8, E = 9.5e-05
                   *->dgvCkpChpsCatGCtGpgadqCtsCkhgyyldgngtCvseCppgty
                       + C  Ch +Ca GCtGp++ +C+ C+++++     tC ++Cpp   
   pj00909s1   228    PSDC--CHNQCAAGCTGPRESDCLVCRKFRDE---ATCKDTCPPLML 269  

                   a<-*
                   +   
   pj00909s1   270 Y    270  

SM00261: domain 2 of 3, from 496 to 547: score 38.5, E = 8.8e-07
                   *->dgvC....kpChpsCat.GCtGpgadqCtsCkhgyyldgngtCvseC
                      ++ C+ +++ Ch+ C+ +GC+Gp + +C+sC++   +   ++Cv++C
   pj00909s1   496    ENSCkatgQVCHALCSPeGCWGPEPKDCVSCRNVSRG---RECVDKC 539  

                   p..pgtya<-*
                   +  +g+ +   
   pj00909s1   540 NllEGEPR    547  

SM00261: domain 3 of 3, from 552 to 601: score 48.2, E = 1.1e-09
                   *->dgvCkpChpsCat.....GCtGpgadqCtsCkhgyyldgngtCvseC
                      +++C  Chp+C+ +  + +CtG g+d+C+ C+h+ ++++   Cv++C
   pj00909s1   552    NSECIQCHPECLPqamniTCTGRGPDNCIQCAHYIDGPH---CVKTC 595  

                   ppgtya<-*
                   p+g  +   
   pj00909s1   596 PAGVMG    601  

SM00219: domain 1 of 1, from 712 to 968: score 443.2, E = 1.4e-128
                   *->ltlgkkLGeGaFGeVykGtlk.......ieVAVKtLkeda....kee
                       +++k+LG+GaFG+VykG +++++++ +i+VA+K L+e ++++  +e
   pj00909s1   712    FKKIKVLGSGAFGTVYKGLWIpegekvkIPVAIKELREATspkaNKE 758  

                   FlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdL
                   +l+Ea +M ++  ++p++ +LlG+c++          + +++ +m+ G+L
   pj00909s1   759 ILDEAYVMASV--DNPHVCRLLGICLT--------STVQLITQLMPFGCL 798  

                   ldyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgen
                   ldy r++++++  + Ll++++QIAkGM+YLe++++vHRDLAARN+Lv+ +
   pj00909s1   799 LDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTP 848  

                   kvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslk
                   ++vKI+DFGL++ l+ +      ++ Y++    ggk  +Pi+WmA+Es+ 
   pj00909s1   849 QHVKITDFGLAKLLGAE------EKEYHAE---GGK--VPIKWMALESIL 887  

                   dgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyR
                   ++++t++SDVWS+GV+ WE++t+G +PY g     ++++e+   l+kG+R
   pj00909s1   888 HRIYTHQSDVWSYGVTVWELMTFGSKPYDG-----IPASEISSILEKGER 932  

                   lpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   lp+P+         C+ ++Y++M +CW+ d+++RP F+el+ ++   
   pj00909s1   933 LPQPPI--------CTIDVYMIMVKCWMIDADSRPKFRELIIEF    968  

SM00220: domain 1 of 1, from 712 to 969: score 158.6, E = 6.3e-43
                   *->YellkklGkGaFGkVylardkk....tgrlvAiKvik........er
                      ++++k+lG+GaFG+Vy++ ++ ++++ +  vAiK++++ ++++ ++ 
   pj00909s1   712    FKKIKVLGSGAFGTVYKGLWIPegekVKIPVAIKELReatspkanKE 758  

                   ilrEikiLkk.dHPNIVkLydvfeddklylVmEyceGdlGdLfdllkkrg
                   il E  ++ + d P++++L++++ ++ + l++ +++   G L+d+ ++++
   pj00909s1   759 ILDEAYVMASvDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVREHK 806  

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hv
                    +     +  +    ++ Qi+++++YL +++ +HRDL   N+L+ +++hv
   pj00909s1   807 DN-----IGSqYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTpqHV 851  

                   KlaDFGlArql.........ttfvGTpeYmAPEvl...gYgkpavDiWSl
                   K++DFGlA++l+ ++++ +     +   +mA E + ++ Y++  +D+WS 
   pj00909s1   852 KITDFGLAKLLgaeekeyhaEGGKVPIKWMALESIlhrIYTH-QSDVWSY 900  

                   GcilyEllt.GkpPFp.....qldlifkkig........SpeakdLikkl
                   G++++El+t G  P+++ + +++  i++k  + + ++  + ++  ++ k+
   pj00909s1   901 GVTVWELMTfGSKPYDgipasEISSILEKGErlpqppicTIDVYMIMVKC 950  

                   LvkdPekRlta.eaLedeldikaHPff<-*
                   +  d + R+  +e+          +f    
   pj00909s1   951 WMIDADSRPKFrELII--------EFS    969  

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