hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-13080893/chunk_1/iprscan-20080813-13080893.nocrc
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Query sequence: pj00928
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00004.19.fs ATPase family associated with various ce   198.6    8.1e-60   2
PF00004.19.ls ATPase family associated with various ce   147.8    2.7e-41   1
PF07728.4.fs ATPase family associated with various ce    40.4    1.6e-11   2
PF07726.2.fs ATPase family associated with various ce    31.9    2.5e-09   2
PF01078.11.fs Magnesium chelatase, subunit ChlI           23.7    3.2e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00004.19.fs   1/2     482   665 ..     1   215 []   145.9    7e-44
PF00004.19.ls   1/1     482   665 ..     1   215 []   147.8  2.7e-41
PF07726.2.fs   1/2     483   511 ..     1    30 [.    12.0   0.0022
PF00004.19.fs   2/2     756   800 ..     1    46 [.    52.8  9.3e-16
PF07726.2.fs   2/2     757   784 ..     1    29 [.    19.9  9.8e-06

Alignments of top-scoring domains:
PF00004.19.fs: domain 1 of 2, from 482 to 665: score 145.9, E = 7e-44
                   *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv
                      +vLL GPPG+GKT+++ a +++lg++++++ +s+l+++  G  e+++
     pj00928   482    SVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKL 528  

                   ralfelArkslkaaPspiiFIDEiDalapkRgdegdvssrvvnqLltemD
                   +a+f++Ar++    P  ++++  +D l+++R+  g  +++ v++ l  + 
     pj00928   529 QAIFSRARRC---RPA-VLLLTAVDLLGRDRD--GLGEDARVMAVLRHL- 571  

                   L.ErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrrie
                   L  ++ +++           ++ +v+a+T r ++l++       f +++e
     pj00928   572 LlNEDPLNS----------CPPLMVVATTSRAQDLPADVQT--AFPHELE 609  

                   vplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArrtpg
                   vp  +e +Rl+Il+ +++++pl+          +v+l +    lArr+ g
     pj00928   610 VPALSEGQRLSILRALTAHLPLG---------QEVNLAQ----LARRCAG 646  

                   fsgadlaalcreAalralr<-*
                   f+ +dl al++ +  +a     
     pj00928   647 FVVGDLYALLTHSSRAACT    665  

PF00004.19.ls: domain 1 of 1, from 482 to 665: score 147.8, E = 2.7e-41
                   *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv
                      +vLL GPPG+GKT+++ a +++lg++++++ +s+l+++  G  e+++
     pj00928   482    SVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKL 528  

                   ralfelArkslkaaPspiiFIDEiDalapkRgdegdvssrvvnqLltemD
                   +a+f++Ar++    P  ++++  +D l+++R+  g  +++ v++ l  + 
     pj00928   529 QAIFSRARRC---RPA-VLLLTAVDLLGRDRD--GLGEDARVMAVLRHL- 571  

                   L.ErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrrie
                   L  ++ +++           ++ +v+a+T r ++l++       f +++e
     pj00928   572 LlNEDPLNS----------CPPLMVVATTSRAQDLPADVQT--AFPHELE 609  

                   vplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArrtpg
                   vp  +e +Rl+Il+ +++++pl+          +v+l +    lArr+ g
     pj00928   610 VPALSEGQRLSILRALTAHLPLG---------QEVNLAQ----LARRCAG 646  

                   fsgadlaalcreAalralr<-*
                   f+ +dl al++ +  +a     
     pj00928   647 FVVGDLYALLTHSSRAACT    665  

PF07726.2.fs: domain 1 of 2, from 483 to 511: score 12.0, E = 0.0022
                   *->HvLlegvPGlaKTllvkalAkaldlkfkRi<-*
                       vLl g PG +KT++v a  ++l+l++  +   
     pj00928   483    -VLLRGPPGCGKTTVVAAACSHLGLHLLKV    511  

PF00004.19.fs: domain 2 of 2, from 756 to 800: score 52.8, E = 9.3e-16
                   *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekr<
                      g+LL+GPPGtGKTllAkavA+e+ ++f++  g  l+++  G ++++ 
     pj00928   756    GLLLHGPPGTGKTLLAKAVATECSLTFLRWPG-GLEGMVGGSGAAA  800  

                   -*
                     
     pj00928     -    -    

PF07726.2.fs: domain 2 of 2, from 757 to 784: score 19.9, E = 9.8e-06
                   *->HvLlegvPGlaKTllvkalAkaldlkfkR<-*
                       +Ll g PG++KTll+ka+A+  +l+f R   
     pj00928   757    -LLLHGPPGTGKTLLAKAVATECSLTFLR    784  

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