hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-13080893/chunk_1/iprscan-20080813-13080893.nocrc
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Query sequence: pj00928
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  37.1    2.3e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/1     479   614 ..     1    92 []    37.1  2.3e-06

Alignments of top-scoring domains:
SM00382: domain 1 of 1, from 479 to 614: score 37.1, E = 2.3e-06
                   *->pgevvllvGppGsGKTTlaralarllgp.....gviyidge....gg
                        ++vll GppG+GKTT+++a + +lg +  + ++  +++e+++  +
     pj00928   479    GTSSVLLRGPPGCGKTTVVAAACSHLGLhllkvPCSSLCAEssgaVE 525  

                   qrirlalalark...dvlllDEitslld......................
                    +++ ++ +ar+ ++ vlll  ++ l +++++++++ +    ++++++++
     pj00928   526 TKLQAIFSRARRcrpAVLLLTAVDLLGRdrdglgedarvmavlrhlllne 575  

                   ........vtviattn..dldpallrrrfdrrivllril<-*
                   + +++   + v+att +   +pa +  +f ++++++      
     pj00928   576 dplnscppLMVVATTSraQDLPADVQTAFPHELEVPALS    614  

//