hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-13154851/chunk_1/iprscan-20080813-13154851.nocrc
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Query sequence: pj00962
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01130.11.ls CD36 family                                    798.8   2.8e-237   1
PF01130.11.fs CD36 family                                    796.9   1.1e-236   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01130.11.fs   1/1      33   473 ..     1   597 []   796.9 1.1e-236
PF01130.11.ls   1/1      33   473 ..     1   597 []   798.8 2.8e-237

Alignments of top-scoring domains:
PF01130.11.fs: domain 1 of 1, from 33 to 473: score 796.9, E = 1.1e-236
                   *->srlnrkliilaVigavfalggiivwvvfpsIidsqvkknvvLrpgtD
                        ++++  +l+V g+++a++g +++v++ps+i++qv+knv+++p + 
     pj00962    33    AKARWAAGALGVAGLLCAVLGAVMIVMVPSLIKQQVLKNVRIDPSS- 78   

                   GsLndaffsWekpPvpvylsFYiFNVTNPdEilnnGakPnVkEvGPYtyr
                       ++f++W+++P+p+yls+Y+F+V NP Eil+ G+kP+V+E+GPY+yr
     pj00962    79 ----LSFNMWKEIPIPFYLSVYFFDVMNPSEILK-GEKPQVRERGPYVYR 123  

                   ErteqKenitFsdNdTvmyyennktyvFePdlSvgdekydDkivfPDmGF
                   E +++K+nitF++NdTv++ e ++t++F+P +S g e  +D+iv+P    
     pj00962   124 E-FRHKSNITFNNNDTVSFLE-YRTFQFQPSKSHGSE--SDYIVMP---- 165  

                   qvGiDqiDtviEGiLKNilvltiCHavmqmkdpagqimpilkliieGELG
                                   Nilvl+   a+ +m+++++    +lkli++    
     pj00962   166 ----------------NILVLG---AAVMMENKPM----TLKLIMT---- 188  

                   vglkllgekpFvtvTVgelLfdGYeDPllsvahSgeFvnlfncifkgkds
                   +++++lge++F+++TVge+++ GY+DP         +vnl+n        
     pj00962   189 LAFTTLGERAFMNRTVGEIMW-GYKDP---------LVNLIN-------- 220  

                   vlGvpiqipiypkFGlAPKPLDDPPiqFygyNnsTsDgiytvfTGkdDis
                   ++ +p ++p++ kFGl           F+++Nn +++g++tvfTG+++is
     pj00962   221 KY-FPGMFPFKDKFGL-----------FAELNN-SDSGLFTVFTGVQNIS 257  

                   kvGqvdeWnGktenLFniGntLpaewWtYAntdkCnmPnALvinGtTdGd
                   ++++vd+WnG+++        ++  +W+   +d+Cnm     inG T+G+
     pj00962   258 RIHLVDKWNGLSK--------VD--FWH---SDQCNM-----ING-TSGQ 288  

                   mfpPfltktdvLqfFssDlCRsfklvFqeegtvknHGIPtyRFvvpveef
                   m+pPf+t++++L+f+s+++CRs+kl ++e+g+++  GIPtyRFv+p    
     pj00962   289 MWPPFMTPESSLEFYSPEACRSMKLMYKESGVFE--GIPTYRFVAP---- 332  

                   DttsdnnagfcypNiEkvnYFpdwpsceykaQACGLnHtKlpsGidCvld
                    t+++n  g+ yp        p++++c+     C      l+sG   +++
     pj00962   333 KTLFAN--GSIYP--------PNEGFCP-----C------LESG---IQN 358  

                   isqYDnFCrkgaPGSlvNGTYlLPPGmfPlvCyPGrlvptPFaiilSfPH
                   +s+    Cr+ aP                              ++lS+PH
     pj00962   359 VST----CRFSAP------------------------------LFLSHPH 374  

                   FYqAdpvvteaVeGlhPdpeeHePtflDiePlTGttLqvakRlQiNlpVk
                   F++Adpv++eaV GlhP++e H+ +flDi+P+TG++++++++lQ++l+ k
     pj00962   375 FLNADPVLAEAVTGLHPNQEAHS-LFLDIHPVTGIPMNCSVKLQLSLYMK 423  

                   rvkdieqtsnmpnvivPlfWlnesilmkdetvatlysqlvlpprivgliq
                   +v +i+qt+++++v++Pl+W+ es++m++et+ t+y+qlvl+p++++++q
     pj00962   424 SVAGIGQTGKIEPVVLPLLWFAESGAMEGETLHTFYTQLVLMPKVMHYAQ 473  

                   <-*
                      
     pj00962     -     -    

PF01130.11.ls: domain 1 of 1, from 33 to 473: score 798.8, E = 2.8e-237
                   *->srlnrkliilaVigavfalggiivwvvfpsIidsqvkknvvLrpgtD
                        ++++  +l+V g+++a++g +++v++ps+i++qv+knv+++p + 
     pj00962    33    AKARWAAGALGVAGLLCAVLGAVMIVMVPSLIKQQVLKNVRIDPSS- 78   

                   GsLndaffsWekpPvpvylsFYiFNVTNPdEilnnGakPnVkEvGPYtyr
                       ++f++W+++P+p+yls+Y+F+V NP Eil+ G+kP+V+E+GPY+yr
     pj00962    79 ----LSFNMWKEIPIPFYLSVYFFDVMNPSEILK-GEKPQVRERGPYVYR 123  

                   ErteqKenitFsdNdTvmyyennktyvFePdlSvgdekydDkivfPDmGF
                   E +++K+nitF++NdTv++ e ++t++F+P +S g e  +D+iv+P    
     pj00962   124 E-FRHKSNITFNNNDTVSFLE-YRTFQFQPSKSHGSE--SDYIVMP---- 165  

                   qvGiDqiDtviEGiLKNilvltiCHavmqmkdpagqimpilkliieGELG
                                   Nilvl+   a+ +m+++++    +lkli++    
     pj00962   166 ----------------NILVLG---AAVMMENKPM----TLKLIMT---- 188  

                   vglkllgekpFvtvTVgelLfdGYeDPllsvahSgeFvnlfncifkgkds
                   +++++lge++F+++TVge+++ GY+DP         +vnl+n        
     pj00962   189 LAFTTLGERAFMNRTVGEIMW-GYKDP---------LVNLIN-------- 220  

                   vlGvpiqipiypkFGlAPKPLDDPPiqFygyNnsTsDgiytvfTGkdDis
                   ++ +p ++p++ kFGl           F+++Nn +++g++tvfTG+++is
     pj00962   221 KY-FPGMFPFKDKFGL-----------FAELNN-SDSGLFTVFTGVQNIS 257  

                   kvGqvdeWnGktenLFniGntLpaewWtYAntdkCnmPnALvinGtTdGd
                   ++++vd+WnG+++        ++  +W+   +d+Cnm     inG T+G+
     pj00962   258 RIHLVDKWNGLSK--------VD--FWH---SDQCNM-----ING-TSGQ 288  

                   mfpPfltktdvLqfFssDlCRsfklvFqeegtvknHGIPtyRFvvpveef
                   m+pPf+t++++L+f+s+++CRs+kl ++e+g+++  GIPtyRFv+p    
     pj00962   289 MWPPFMTPESSLEFYSPEACRSMKLMYKESGVFE--GIPTYRFVAP---- 332  

                   DttsdnnagfcypNiEkvnYFpdwpsceykaQACGLnHtKlpsGidCvld
                    t+++n  g+ yp        p++++c+     C      l+sG   +++
     pj00962   333 KTLFAN--GSIYP--------PNEGFCP-----C------LESG---IQN 358  

                   isqYDnFCrkgaPGSlvNGTYlLPPGmfPlvCyPGrlvptPFaiilSfPH
                   +s+    Cr+ aP                              ++lS+PH
     pj00962   359 VST----CRFSAP------------------------------LFLSHPH 374  

                   FYqAdpvvteaVeGlhPdpeeHePtflDiePlTGttLqvakRlQiNlpVk
                   F++Adpv++eaV GlhP++e H+ +flDi+P+TG++++++++lQ++l+ k
     pj00962   375 FLNADPVLAEAVTGLHPNQEAHS-LFLDIHPVTGIPMNCSVKLQLSLYMK 423  

                   rvkdieqtsnmpnvivPlfWlnesilmkdetvatlysqlvlpprivgliq
                   +v +i+qt+++++v++Pl+W+ es++m++et+ t+y+qlvl+p++++++q
     pj00962   424 SVAGIGQTGKIEPVVLPLLWFAESGAMEGETLHTFYTQLVLMPKVMHYAQ 473  

                   <-*
                      
     pj00962     -     -    

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