hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-17494163/chunk_1/iprscan-20090525-17494163.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj01045 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 477.1 2e-140 1 PF07714.7.fs Protein tyrosine kinase 475.2 7.3e-140 1 PF03623.4.fs Focal adhesion targeting region 366.6 2.6e-126 1 PF03623.4.ls Focal adhesion targeting region 368.5 9.9e-108 1 PF00069.15.ls Protein kinase domain 156.1 8.4e-44 1 PF00069.15.fs Protein kinase domain 154.3 1e-43 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.ls 1/1 430 684 .. 1 287 [] 156.1 8.4e-44 PF00069.15.fs 1/1 430 684 .. 1 287 [] 154.3 1e-43 PF07714.7.fs 1/1 430 684 .. 1 272 [] 475.2 7.3e-140 PF07714.7.ls 1/1 430 684 .. 1 272 [] 477.1 2e-140 PF03623.4.fs 1/1 875 1013 .. 1 139 [] 366.6 2.6e-126 PF03623.4.ls 1/1 875 1013 .. 1 139 [] 368.5 9.9e-108 Alignments of top-scoring domains: PF00069.15.ls: domain 1 of 1, from 430 to 684: score 156.1, E = 8.4e-44 *->yelleklGsGsfGtVykak...hkgtgkiVAvKiikkr..kekskkd +l ++lG+G fG+Vy+++ ++hkg+ + VAvK+ kk+ + ++++k pj01045 430 VVLNRILGEGFFGEVYEGVytnHKGEKINVAVKTCKKDctLDNKEKF 476 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf ++ E+ i+k+L+Hp+Iv+li++ e + ++++E+ + G +L pj01045 477 MS-----EAVIMKNLDHPHIVKLIGIIE-EEPTWIIMELYPYG----ELG 516 dylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILl +yl r+k++l ++ + lQi+++++YL s +++HRD+ NIL+ pj01045 517 HYLE--RNKNSL--KVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILV 562 dnngvvdaflKiaDFGlAkklst.sss.lttfvGTpw...YmAPEvllgg +++ +K++DFGl++ + +++++ +T+ + ++m+PE ++ pj01045 563 A-SPEC---VKLGDFGLSR---YiEDEdYYKASVTRLpikWMSPESIN-F 604 ngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgppl + +t++DvW + v ++e l+ Gk PF ++ d + +++k + pj01045 605 RRFTTASDVWMFAVCMWEILSfGKQPFFWL---EnKDVIGVLEKGDR--- 648 efdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHP + p ++ + + L+++c+++DPs+R+ ++e++++ pj01045 649 -LPKPDLCP-------------PVLYTLMTRCWDYDPSDRPRFTELVCS- 683 wf<-* + pj01045 684 -L 684 PF00069.15.fs: domain 1 of 1, from 430 to 684: score 154.3, E = 1e-43 *->yelleklGsGsfGtVykak...hkgtgkiVAvKiikkr..kekskkd +l ++lG+G fG+Vy+++ ++hkg+ + VAvK+ kk+ + ++++k pj01045 430 VVLNRILGEGFFGEVYEGVytnHKGEKINVAVKTCKKDctLDNKEKF 476 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf ++ E+ i+k+L+Hp+Iv+li++ e + ++++E+ + G +L pj01045 477 MS-----EAVIMKNLDHPHIVKLIGIIE-EEPTWIIMELYPYG----ELG 516 dylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILl +yl r+k++l ++ + lQi+++++YL s +++HRD+ NIL+ pj01045 517 HYLE--RNKNSL--KVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILV 562 dnngvvdaflKiaDFGlAkklst.sss.lttfvGTpw...YmAPEvllgg +++ +K++DFGl++ + +++++ +T+ + ++m+PE ++ pj01045 563 A-SPEC---VKLGDFGLSR---YiEDEdYYKASVTRLpikWMSPESIN-F 604 ngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgppl + +t++DvW + v ++e l+ Gk PF ++ d + +++k + pj01045 605 RRFTTASDVWMFAVCMWEILSfGKQPFFWL---EnKDVIGVLEKGDR--- 648 efdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHP + p ++ + + L+++c+++DPs+R+ ++e++++ pj01045 649 -LPKPDLCP-------------PVLYTLMTRCWDYDPSDRPRFTELVCS- 683 wf<-* + pj01045 684 -L 684 PF07714.7.fs: domain 1 of 1, from 430 to 684: score 475.2, E = 7.3e-140 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie ++l++ LGeG FGeVy+G+++ ++g++i VAVKt+k+ +++ ++ pj01045 430 VVLNRILGEGFFGEVYEGVYT-NHKGEKINVAVKTCKK-DCTLDN-- 472 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL +e+F++EA iMk+l dHp+iV+L+G++ +eP +i++E+ ++G L pj01045 473 KEKFMSEAVIMKNL-DHPHIVKLIGIIE--EEP----TWIIMELYPYGEL 515 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++L ++ +++L++ +L+ ++lQi+k+M+YLes n+vHRD+A RN+LV+ pj01045 516 GHYLERN--KNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVA 563 enlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtskS ++ +VK +DFGL+R+i +d+ Y +k + ++lP+kWm+PEs+++++Ft++S pj01045 564 SPECVKLGDFGLSRYI-EDEDY-YKASVTRLPIKWMSPESINFRRFTTAS 611 DVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPdel DVW+F V++WEi+++G+qP + + n +v+ l e+G RLp+P++CP+ l pj01045 612 DVWMFAVCMWEILSFGKQP-FFWLENKDVIGVL-EKGDRLPKPDLCPPVL 659 YdlMlqCWaedPedRPtFselveeL<-* Y+lM++CW++dP+dRP+F+elv L pj01045 660 YTLMTRCWDYDPSDRPRFTELVCSL 684 PF07714.7.ls: domain 1 of 1, from 430 to 684: score 477.1, E = 2e-140 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie ++l++ LGeG FGeVy+G+++ ++g++i VAVKt+k+ +++ ++ pj01045 430 VVLNRILGEGFFGEVYEGVYT-NHKGEKINVAVKTCKK-DCTLDN-- 472 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL +e+F++EA iMk+l dHp+iV+L+G++ +eP +i++E+ ++G L pj01045 473 KEKFMSEAVIMKNL-DHPHIVKLIGIIE--EEP----TWIIMELYPYGEL 515 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++L ++ +++L++ +L+ ++lQi+k+M+YLes n+vHRD+A RN+LV+ pj01045 516 GHYLERN--KNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVA 563 enlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtskS ++ +VK +DFGL+R+i +d+ Y +k + ++lP+kWm+PEs+++++Ft++S pj01045 564 SPECVKLGDFGLSRYI-EDEDY-YKASVTRLPIKWMSPESINFRRFTTAS 611 DVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPdel DVW+F V++WEi+++G+qP + + n +v+ l e+G RLp+P++CP+ l pj01045 612 DVWMFAVCMWEILSFGKQP-FFWLENKDVIGVL-EKGDRLPKPDLCPPVL 659 YdlMlqCWaedPedRPtFselveeL<-* Y+lM++CW++dP+dRP+F+elv L pj01045 660 YTLMTRCWDYDPSDRPRFTELVCSL 684 PF03623.4.fs: domain 1 of 1, from 875 to 1013: score 366.6, E = 2.6e-126 *->tanldRadDeVYlnvtllVkavleLsqevekappEgYvelVKnVGlk tanldR+dD+VYlnv++lV+avleL++e++++ppEgYv++VKnVGl+ pj01045 875 TANLDRTDDLVYLNVMELVRAVLELKNELCQLPPEGYVVVVKNVGLT 921 LRkLLtSVDeilpiLPAsalkEiemAqklLnkDLaELinkMrLAQQYsvT LRkL++SVD++lp+LP+s+++Eie++qklLnkDLaELinkMrLAQQ++vT pj01045 922 LRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQNAVT 971 sLdeEYkkqMLtAAHvLAvDAKNLLDvVDqarlryqllfpPs<-* sL+eE+k+qMLtA+H+LAvDAKNLLD+VDqa+++++l++pP+ pj01045 972 SLSEECKRQMLTASHTLAVDAKNLLDAVDQAKVLANLAHPPA 1013 PF03623.4.ls: domain 1 of 1, from 875 to 1013: score 368.5, E = 9.9e-108 *->tanldRadDeVYlnvtllVkavleLsqevekappEgYvelVKnVGlk tanldR+dD+VYlnv++lV+avleL++e++++ppEgYv++VKnVGl+ pj01045 875 TANLDRTDDLVYLNVMELVRAVLELKNELCQLPPEGYVVVVKNVGLT 921 LRkLLtSVDeilpiLPAsalkEiemAqklLnkDLaELinkMrLAQQYsvT LRkL++SVD++lp+LP+s+++Eie++qklLnkDLaELinkMrLAQQ++vT pj01045 922 LRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQNAVT 971 sLdeEYkkqMLtAAHvLAvDAKNLLDvVDqarlryqllfpPs<-* sL+eE+k+qMLtA+H+LAvDAKNLLD+VDqa+++++l++pP+ pj01045 972 SLSEECKRQMLTASHTLAVDAKNLLDAVDQAKVLANLAHPPA 1013 //