hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17415219/chunk_1/iprscan-20090618-17415219.nocrc
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Query sequence: pj01087
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03359.4.ls Guanylate-kinase-associated protein (GKAP) p   987.8   3.7e-294   1
PF03359.4.fs Guanylate-kinase-associated protein (GKAP) p   985.9   1.3e-293   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03359.4.fs   1/1     627   985 .]     1   365 []   985.9 1.3e-293
PF03359.4.ls   1/1     627   985 .]     1   365 []   987.8 3.7e-294

Alignments of top-scoring domains:
PF03359.4.fs: domain 1 of 1, from 627 to 985: score 985.9, E = 1.3e-293
                   *->EdrskavkkkklsSIGiQVddieesdkkeEsksaskFqSiGVQVEed
                      E+rs+a+++k+++SIG+QV+  ++sd+++E++s+++F+SiGVQVEed
     pj01087   627    ELRSLARQRKWRPSIGVQVE--TISDSDTENRSRREFHSIGVQVEED 671  

                   kRsarFkRSnSvtaavqADldleDaadsslkstEDksLqpgrtarrqsse
                   kR+arFkRSnSvta+vqADl+le++a++++++tEDk+Lq+gr ++r +se
     pj01087   672 KRRARFKRSNSVTAGVQADLELEGLAGLATVATEDKALQFGRSFQRHASE 721  

                   adaGPRAstvsvfktaqikralAydddyDldYEPPAldaSslPPPdPAPG
                   +++GPRA+t+svf+t+++++++Ay+++y+l+YEPPA+d+S++P P P PG
     pj01087   722 PQPGPRAPTYSVFRTVHTQGQWAYREGYPLPYEPPATDGSPGPAPAPTPG 771  

                   PGSGRRDSWmesssespaeaaqrSaCrRDGeWFLKLLqAEverLEGWCkQ
                   PG+GRRDSW+e++s+s++++++ S+C+RDGeWF+K+L+AEve+LE+WC+Q
     pj01087   772 PGAGRRDSWIERGSRSLPDSGRASPCPRDGEWFIKMLRAEVEKLEHWCQQ 821  

                   MerEakennLpEeiLgKirsAVGSAQLLmSQKfqQFreLCeqnLnPdAfP
                   MerEa++++LpEeiL+KirsAVGS+QLL+SQK+qQF++LC+q+ +P+AfP
     pj01087   822 MEREAEDYELPEEILEKIRSAVGSTQLLLSQKVQQFFRLCQQSMDPTAFP 871  

                   rPTaQDLAGFWDLLQLSIEdismKFdELyqLKANsWklletPlKdKeEkk
                   +PT+QDLAGFWDLLQLSIEd+++KF+EL+qLKANsWklle+    KeEkk
     pj01087   872 VPTFQDLAGFWDLLQLSIEDVTLKFLELQQLKANSWKLLEP----KEEKK 917  

                   aPPPVPKKPAkgkAalvrerSldavdkQRQEARKRLLAAKRAASvRqnSA
                   +PPP+PKKP +g++++v+erSld+vd+QRQEARKRLLAAKRAAS+R++SA
     pj01087   918 VPPPIPKKPLRGRGVPVKERSLDSVDRQRQEARKRLLAAKRAASFRHSSA 967  

                   TESAdSIEIYiPEAQTRL<-*
                   TESAdSIEIYiPEAQTRL   
     pj01087   968 TESADSIEIYIPEAQTRL    985  

PF03359.4.ls: domain 1 of 1, from 627 to 985: score 987.8, E = 3.7e-294
                   *->EdrskavkkkklsSIGiQVddieesdkkeEsksaskFqSiGVQVEed
                      E+rs+a+++k+++SIG+QV+  ++sd+++E++s+++F+SiGVQVEed
     pj01087   627    ELRSLARQRKWRPSIGVQVE--TISDSDTENRSRREFHSIGVQVEED 671  

                   kRsarFkRSnSvtaavqADldleDaadsslkstEDksLqpgrtarrqsse
                   kR+arFkRSnSvta+vqADl+le++a++++++tEDk+Lq+gr ++r +se
     pj01087   672 KRRARFKRSNSVTAGVQADLELEGLAGLATVATEDKALQFGRSFQRHASE 721  

                   adaGPRAstvsvfktaqikralAydddyDldYEPPAldaSslPPPdPAPG
                   +++GPRA+t+svf+t+++++++Ay+++y+l+YEPPA+d+S++P P P PG
     pj01087   722 PQPGPRAPTYSVFRTVHTQGQWAYREGYPLPYEPPATDGSPGPAPAPTPG 771  

                   PGSGRRDSWmesssespaeaaqrSaCrRDGeWFLKLLqAEverLEGWCkQ
                   PG+GRRDSW+e++s+s++++++ S+C+RDGeWF+K+L+AEve+LE+WC+Q
     pj01087   772 PGAGRRDSWIERGSRSLPDSGRASPCPRDGEWFIKMLRAEVEKLEHWCQQ 821  

                   MerEakennLpEeiLgKirsAVGSAQLLmSQKfqQFreLCeqnLnPdAfP
                   MerEa++++LpEeiL+KirsAVGS+QLL+SQK+qQF++LC+q+ +P+AfP
     pj01087   822 MEREAEDYELPEEILEKIRSAVGSTQLLLSQKVQQFFRLCQQSMDPTAFP 871  

                   rPTaQDLAGFWDLLQLSIEdismKFdELyqLKANsWklletPlKdKeEkk
                   +PT+QDLAGFWDLLQLSIEd+++KF+EL+qLKANsWklle+    KeEkk
     pj01087   872 VPTFQDLAGFWDLLQLSIEDVTLKFLELQQLKANSWKLLEP----KEEKK 917  

                   aPPPVPKKPAkgkAalvrerSldavdkQRQEARKRLLAAKRAASvRqnSA
                   +PPP+PKKP +g++++v+erSld+vd+QRQEARKRLLAAKRAAS+R++SA
     pj01087   918 VPPPIPKKPLRGRGVPVKERSLDSVDRQRQEARKRLLAAKRAASFRHSSA 967  

                   TESAdSIEIYiPEAQTRL<-*
                   TESAdSIEIYiPEAQTRL   
     pj01087   968 TESADSIEIYIPEAQTRL    985  

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