hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-13334368/chunk_1/iprscan-20080813-13334368.nocrc
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Query sequence: pj01450
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       126.8    5.6e-35   3
PF00400.22.fs WD domain, G-beta repeat                       120.9    3.4e-33   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/3      83   121 ..     1    38 []    36.1  3.4e-09
PF00400.22.ls   1/3      83   121 ..     1    38 []    38.0  2.9e-08
PF00400.22.fs   2/3     125   163 ..     1    38 []    32.8  2.8e-08
PF00400.22.ls   2/3     125   163 ..     1    38 []    34.8  2.8e-07
PF00400.22.fs   3/3     211   249 ..     1    38 []    52.0  1.1e-13
PF00400.22.ls   3/3     211   249 ..     1    38 []    53.9  4.8e-13

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 3, from 83 to 121: score 36.1, E = 3.4e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         +   +gH ++  ++a+spd g+++++g++Dg++k+W+   
     pj01450    83    ESYVlKQqGHFNSMVALAYSPD-GQYIVTGGDDGKVKVWN    121  

PF00400.22.ls: domain 1 of 3, from 83 to 121: score 38.0, E = 2.9e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         +   +gH ++  ++a+spd g+++++g++Dg++k+W+   
     pj01450    83    ESYVlKQqGHFNSMVALAYSPD-GQYIVTGGDDGKVKVWN    121  

PF00400.22.fs: domain 2 of 3, from 125 to 163: score 32.8, E = 2.8e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g c  +++ H+s+Vt v f    g +++++S Dgt++ +d   
     pj01450   125    GFCFvTFtEHSSGVTGVTFTAT-GYVVVTSSMDGTVRAFD    163  

PF00400.22.ls: domain 2 of 3, from 125 to 163: score 34.8, E = 2.8e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g c  +++ H+s+Vt v f    g +++++S Dgt++ +d   
     pj01450   125    GFCFvTFtEHSSGVTGVTFTAT-GYVVVTSSMDGTVRAFD    163  

PF00400.22.fs: domain 3 of 3, from 211 to 249: score 52.0, E = 1.1e-13
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g +++vl+gH+++++ ++f+p   ++las+S+D+t+++Wd   
     pj01450   211    GRLLdVLsGHEGPISGLCFNPM-KSVLASASWDKTVRLWD    249  

PF00400.22.ls: domain 3 of 3, from 211 to 249: score 53.9, E = 4.8e-13
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g +++vl+gH+++++ ++f+p   ++las+S+D+t+++Wd   
     pj01450   211    GRLLdVLsGHEGPISGLCFNPM-KSVLASASWDKTVRLWD    249  

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