hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-13334368/chunk_1/iprscan-20080813-13334368.nocrc
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Query sequence: pj01450
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 131.9    6.7e-35   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/4      82   121 ..     1    46 []    41.3  1.3e-07
SM00320    2/4     124   163 ..     1    46 []    34.3  1.6e-05
SM00320    3/4     166   207 ..     1    46 []     3.3  1.5e+02
SM00320    4/4     210   249 ..     1    46 []    52.9    4e-11

Alignments of top-scoring domains:
SM00320: domain 1 of 4, from 82 to 121: score 41.3, E = 1.3e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + + + + +gH +  +  ++a+spdg      +++++g++Dg++++W
     pj01450    82    SeSYVLKQQGHFN--SMVALAYSPDG------QYIVTGGdDGKVKVW 120  

                   d<-*
                   +   
     pj01450   121 N    121  

SM00320: domain 2 of 4, from 124 to 163: score 34.3, E = 1.6e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ +  t++ H++  +Vt+v+f  +g       +++++s Dgt+r +
     pj01450   124    SgFCFVTFTEHSS--GVTGVTFTATG------YVVVTSSmDGTVRAF 162  

                   d<-*
                   d   
     pj01450   163 D    163  

SM00320: domain 3 of 4, from 166 to 207: score 3.3, E = 1.5e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt.irl
                        +  rt++  +  +  ++va++ +g      +++ +g +D+ +i +
     pj01450   166    RyRNFRTFTSPRP-TQFSCVAVDASG------EIVSAGAqDSFeIFV 205  

                   Wd<-*
                   W+   
     pj01450   206 WS    207  

SM00320: domain 4 of 4, from 210 to 249: score 52.9, E = 4e-11
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++ll +l+gH+g  p+++++f+p        ++las+s+D+t+rlW
     pj01450   210    TgRLLDVLSGHEG--PISGLCFNPMK------SVLASASwDKTVRLW 248  

                   d<-*
                   d   
     pj01450   249 D    249  

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