hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17473406/chunk_1/iprscan-20090618-17473406.nocrc
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Query sequence: pj01509
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF07741.3.fs    Brf1-like TBP-binding domain            181.4    3.1e-53   1
PF07741.3.ls    Brf1-like TBP-binding domain            183.2      6e-52   1
PF00382.10.ls   Transcription factor TFIIB repeat       133.2    6.5e-37   2
PF00382.10.fs   Transcription factor TFIIB repeat       129.3      1e-35   2
PF08271.2.fs    TFIIB zinc-binding                       63.8    3.3e-18   1
PF08271.2.ls    TFIIB zinc-binding                       65.8    1.3e-16   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF08271.2.fs      1/1      18    60 ..     1    44 []    63.8  3.3e-18
PF08271.2.ls      1/1      18    60 ..     1    44 []    65.8  1.3e-16
PF00382.10.ls     1/2     107   177 ..     1    74 []    57.5  4.1e-14
PF00382.10.fs     1/2     107   177 ..     1    74 []    55.5  1.4e-14
PF00382.10.ls     2/2     201   274 ..     1    74 []    75.7  1.3e-19
PF00382.10.fs     2/2     201   274 ..     1    74 []    73.7  1.3e-19
PF07741.3.fs      1/1     462   561 ..     1   121 []   181.4  3.1e-53
PF07741.3.ls      1/1     462   561 ..     1   121 []   183.2    6e-52

Alignments of top-scoring domains:
PF08271.2.fs: domain 1 of 1, from 18 to 60: score 63.8, E = 3.3e-18
                   *->mkCPeCGspteiveDyerGelvCtdCGlVieeniIDsgpEWraf<-*
                      ++C  CG+ t+i+ D +rG++vCt+CG+V+e+niI+s++++ ++   
     pj01509    18    RVCRGCGG-TDIELDAARGDAVCTACGSVLEDNIIVSEVQFVES    60   

PF08271.2.ls: domain 1 of 1, from 18 to 60: score 65.8, E = 1.3e-16
                   *->mkCPeCGspteiveDyerGelvCtdCGlVieeniIDsgpEWraf<-*
                      ++C  CG+ t+i+ D +rG++vCt+CG+V+e+niI+s++++ ++   
     pj01509    18    RVCRGCGG-TDIELDAARGDAVCTACGSVLEDNIIVSEVQFVES    60   

PF00382.10.ls: domain 1 of 2, from 107 to 177: score 57.5, E = 4.1e-14
                   *->ikrfadaLeLpeKkikVadaAnelaklaveenllkGRSpesiaAAci
                      i ++  +L L     +  d A++ +k av++ l++GR+++ ++AAc+
     pj01509   107    IHHLGNQLQLNQ---HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACL 150  

                   YiACRleevkRtlkEIasvaqVsekti<-*
                   Y+ CR e+++++l + ++++qV ++ +   
     pj01509   151 YLVCRTEGTPHMLLDLSDLLQVNVYVL    177  

PF00382.10.fs: domain 1 of 2, from 107 to 177: score 55.5, E = 1.4e-14
                   *->ikrfadaLeLpeKkikVadaAnelaklaveenllkGRSpesiaAAci
                      i ++  +L L     +  d A++ +k av++ l++GR+++ ++AAc+
     pj01509   107    IHHLGNQLQLNQ---HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACL 150  

                   YiACRleevkRtlkEIasvaqVsekti<-*
                   Y+ CR e+++++l + ++++qV ++ +   
     pj01509   151 YLVCRTEGTPHMLLDLSDLLQVNVYVL    177  

PF00382.10.ls: domain 2 of 2, from 201 to 274: score 75.7, E = 1.3e-19
                   *->ikrfadaLeLpeKkikVadaAnelaklaveenllkGRSpesiaAAci
                      i+rfa  Le++eK  +V   A +l++++++++++ GR+p ++ +A++
     pj01509   201    IPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAAL 247  

                   YiACRleevkRtlkEIasvaqVsekti<-*
                   ++A+R+  ++Rt kE+ sv +V e t+   
     pj01509   248 LVAARMHDFRRTVKEVISVVKVCESTL    274  

PF00382.10.fs: domain 2 of 2, from 201 to 274: score 73.7, E = 1.3e-19
                   *->ikrfadaLeLpeKkikVadaAnelaklaveenllkGRSpesiaAAci
                      i+rfa  Le++eK  +V   A +l++++++++++ GR+p ++ +A++
     pj01509   201    IPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAAL 247  

                   YiACRleevkRtlkEIasvaqVsekti<-*
                   ++A+R+  ++Rt kE+ sv +V e t+   
     pj01509   248 LVAARMHDFRRTVKEVISVVKVCESTL    274  

PF07741.3.fs: domain 1 of 1, from 462 to 561: score 181.4, E = 3.1e-53
                   *->nlsDvDDdEienyILnEeEsklKtriWmdlNkdYLkEqekKelklaK
                      +ls++DD Ei++yILnE E+++K ++Wm+ N++YL+Eq++Ke+++aK
     pj01509   462    DLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAK 508  

                   eleeGntkkkkkrkkkkkkkdesasIdaapllgaldlaeasgasTAaEav
                   e+e G++k++k++k++k++++++                   asTA+Ea+
     pj01509   509 EKELGIYKEHKPKKSCKRREPIQ-------------------ASTAREAI 539  

                   kkmLqkSdKklSkKINYDvLkgLf<-*
                   +kmL++  Kk+S+KINY vL+gL    
     pj01509   540 EKMLEQ--KKISSKINYSVLRGLS    561  

PF07741.3.ls: domain 1 of 1, from 462 to 561: score 183.2, E = 6e-52
                   *->nlsDvDDdEienyILnEeEsklKtriWmdlNkdYLkEqekKelklaK
                      +ls++DD Ei++yILnE E+++K ++Wm+ N++YL+Eq++Ke+++aK
     pj01509   462    DLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAK 508  

                   eleeGntkkkkkrkkkkkkkdesasIdaapllgaldlaeasgasTAaEav
                   e+e G++k++k++k++k++++++                   asTA+Ea+
     pj01509   509 EKELGIYKEHKPKKSCKRREPIQ-------------------ASTAREAI 539  

                   kkmLqkSdKklSkKINYDvLkgLf<-*
                   +kmL++  Kk+S+KINY vL+gL    
     pj01509   540 EKMLEQ--KKISSKINYSVLRGLS    561  

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