hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17473406/chunk_1/iprscan-20090618-17473406.nocrc
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Query sequence: pj01509
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00385                                                 103.8    1.9e-26   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00385    1/2     105   186 ..     1    90 []    56.5  3.3e-12
SM00385    2/2     199   283 ..     1    90 []    47.3    2e-09

Alignments of top-scoring domains:
SM00385: domain 1 of 2, from 105 to 186: score 56.5, E = 3.3e-12
                   *->dfLrrvakalnldpetlylAvnlldrfLseykvlkgyspsliAaaal
                      + +  ++++l+l++++l +A+n+++ + s +++++g+++ ++ aa+l
     pj01509   105    RHIHHLGNQLQLNQHCLDTAFNFFKMAVS-RHLTRGRKMAHVIAACL 150  

                   ylAsKteeippwtktlfhytgylppelayteeeilemekllle<-*
                   yl ++te++p+++ +l   +++       +   + +  +ll +   
     pj01509   151 YLVCRTEGTPHMLLDLSDLLQV-------NVYVLGKTFLLLAR    186  

SM00385: domain 2 of 2, from 199 to 283: score 47.3, E = 2e-09
                   *->dfLrrvakalnl...dpetlylAvnlldrfLseykvlkgyspsliAa
                       ++ r+a  l+++++++e+  +A  ll+r+ + +++ +g++ps ++ 
     pj01509   199    LYIPRFAHLLEFgekNHEVSMTALRLLQRMKR-DWMHTGRRPSGLCG 244  

                   aalylAsKteeippwtktlfhytgylppelayteeeilemekllle<-*
                   aal++A+++++  ++ k+ + + ++        e++++++  +  +   
     pj01509   245 AALLVAARMHDFRRTVKEVISVVKV-------CESTLRKRLTEFED    283  

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